FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5147, 70 aa
  1>>>pF1KE5147 70 - 70 aa - 70 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2957+/-0.00024; mu= 7.2465+/- 0.015
 mean_var=69.3526+/-13.651, 0's: 0 Z-trim(122.4): 20  B-trim: 99 in 1/56
 Lambda= 0.154008
 statistics sampled from 40398 (40421) to 40398 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.831), E-opt: 0.2 (0.474), width:  16
 Scan time:  3.540

The best scores are:                                      opt bits E(85289)
NP_006295 (OMIM: 601285) 26S proteasome complex su (  70)  494 117.3   2e-27


>>NP_006295 (OMIM: 601285) 26S proteasome complex subuni  (70 aa)
 initn: 494 init1: 494 opt: 494  Z-score: 613.3  bits: 117.3 E(85289): 2e-27
Smith-Waterman score: 494; 100.0% identity (100.0% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KE5 MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
               10        20        30        40        50        60

               70
pF1KE5 EKHGYKMETS
       ::::::::::
NP_006 EKHGYKMETS
               70




70 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:58:37 2016 done: Mon Nov  7 21:58:38 2016
 Total Scan time:  3.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]