FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5147, 70 aa
  1>>>pF1KE5147 70 - 70 aa - 70 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4449+/-0.000494; mu= 6.3622+/- 0.030
 mean_var=67.3071+/-13.424, 0's: 0 Z-trim(114.9): 7  B-trim: 0 in 0/52
 Lambda= 0.156331
 statistics sampled from 15483 (15490) to 15483 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.832), E-opt: 0.2 (0.476), width:  16
 Scan time:  1.130

The best scores are:                                      opt bits E(32554)
CCDS5646.1 SHFM1 gene_id:7979|Hs108|chr7           (  70)  494 118.9 2.5e-28


>>CCDS5646.1 SHFM1 gene_id:7979|Hs108|chr7                (70 aa)
 initn: 494 init1: 494 opt: 494  Z-score: 622.0  bits: 118.9 E(32554): 2.5e-28
Smith-Waterman score: 494; 100.0% identity (100.0% similar) in 70 aa overlap (1-70:1-70)

               10        20        30        40        50        60
pF1KE5 MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MSEKKQPVDLGLLEEDDEFEEFPAEDWAGLDEDEDAHVWEDNWDDDNVEDDFSNQLRAEL
               10        20        30        40        50        60

               70
pF1KE5 EKHGYKMETS
       ::::::::::
CCDS56 EKHGYKMETS
               70




70 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:58:37 2016 done: Mon Nov  7 21:58:37 2016
 Total Scan time:  1.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]