FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE5137, 146 aa 1>>>pF1KE5137 146 - 146 aa - 146 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 4.4315+/-0.000312; mu= 16.3491+/- 0.019 mean_var=55.9447+/-11.403, 0's: 0 Z-trim(116.4): 15 B-trim: 626 in 1/50 Lambda= 0.171473 statistics sampled from 27545 (27560) to 27545 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.722), E-opt: 0.2 (0.323), width: 16 Scan time: 4.390 The best scores are: opt bits E(85289) NP_001776 (OMIM: 123920) cytidine deaminase [Homo ( 146) 1012 257.7 4.9e-69 >>NP_001776 (OMIM: 123920) cytidine deaminase [Homo sapi (146 aa) initn: 1012 init1: 1012 opt: 1012 Z-score: 1360.4 bits: 257.7 E(85289): 4.9e-69 Smith-Waterman score: 1012; 99.3% identity (100.0% similar) in 146 aa overlap (1-146:1-146) 10 20 30 40 50 60 pF1KE5 MAQKRPACTLKPECVQQLLVCSQEAKQSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY ::::::::::::::::::::::::::.::::::::::::::::::::::::::::::::: NP_001 MAQKRPACTLKPECVQQLLVCSQEAKKSAYCPYSHFPVGAALLTQEGRIFKGCNIENACY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE5 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_001 PLGICAERTAIQKAVSEGYKDFRAIAIASDMQDDFISPCGACRQVMREFGTNWPVYMTKP 70 80 90 100 110 120 130 140 pF1KE5 DGTYIVMTVQELLPSSFGPEDLQKTQ :::::::::::::::::::::::::: NP_001 DGTYIVMTVQELLPSSFGPEDLQKTQ 130 140 146 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 21:43:36 2016 done: Mon Nov 7 21:43:36 2016 Total Scan time: 4.390 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]