FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5128, 128 aa
  1>>>pF1KE5128 128 - 128 aa - 128 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1240+/-0.000327; mu= 11.6158+/- 0.020
 mean_var=56.0987+/-11.242, 0's: 0 Z-trim(114.8): 40  B-trim: 0 in 0/52
 Lambda= 0.171237
 statistics sampled from 24838 (24874) to 24838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.684), E-opt: 0.2 (0.292), width:  16
 Scan time:  3.850

The best scores are:                                      opt bits E(85289)
NP_001003796 (OMIM: 601304) NHP2-like protein 1 [H ( 128)  821 210.4 6.3e-55
NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo ( 128)  821 210.4 6.3e-55
NP_060308 (OMIM: 224230,606470,613987) H/ACA ribon ( 153)  312 84.7 5.3e-17
NP_000963 (OMIM: 185640) 60S ribosomal protein L7a ( 266)  155 46.0 4.1e-05
NP_001030005 (OMIM: 224230,606470,613987) H/ACA ri (  90)  124 38.2  0.0032


>>NP_001003796 (OMIM: 601304) NHP2-like protein 1 [Homo   (128 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1107.0  bits: 210.4 E(85289): 6.3e-55
Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
               70        80        90       100       110       120

               
pF1KE5 QSIERLLV
       ::::::::
NP_001 QSIERLLV
               

>>NP_004999 (OMIM: 601304) NHP2-like protein 1 [Homo sap  (128 aa)
 initn: 821 init1: 821 opt: 821  Z-score: 1107.0  bits: 210.4 E(85289): 6.3e-55
Smith-Waterman score: 821; 100.0% identity (100.0% similar) in 128 aa overlap (1-128:1-128)

               10        20        30        40        50        60
pF1KE5 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQ
               70        80        90       100       110       120

               
pF1KE5 QSIERLLV
       ::::::::
NP_004 QSIERLLV
               

>>NP_060308 (OMIM: 224230,606470,613987) H/ACA ribonucle  (153 aa)
 initn: 297 init1: 297 opt: 312  Z-score: 426.2  bits: 84.7 E(85289): 5.3e-17
Smith-Waterman score: 312; 36.7% identity (70.0% similar) in 120 aa overlap (7-126:32-149)

                                       10        20        30      
pF1KE5                         MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR
                                     :: : :::. .::.::   .... . ::.:
NP_060 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR
              10        20        30        40        50        60 

         40        50        60        70        80        90      
pF1KE5 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS
       .:..:. : .:.: . ..:.:.:. :.:.  :::..:::.:.:::.. ::  :: : : .
NP_060 RGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAGSK
              70        80        90       100       110       120 

        100       110       120          
pF1KE5 RPVIACSVTIKEGSQLKQQIQSIQQSIERLLV  
       ::.  : . .:   . ..  .   . .. :    
NP_060 RPT--CVIMVKPHEEYQEAYDECLEEVQSLPLPL
               130       140       150   

>>NP_000963 (OMIM: 185640) 60S ribosomal protein L7a [Ho  (266 aa)
 initn: 132 init1: 132 opt: 155  Z-score: 212.8  bits: 46.0 E(85289): 4.1e-05
Smith-Waterman score: 155; 36.8% identity (73.7% similar) in 57 aa overlap (35-91:136-192)

           10        20        30        40        50        60    
pF1KE5 DVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLE
                                     :: :.: .:  ..   ....:.: :..:.:
NP_000 TKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIE
         110       120       130       140       150       160     

           70        80        90       100       110       120    
pF1KE5 IILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIE
       ... :: ::.  .::: ....:  :::                                 
NP_000 LVVFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTN
         170       180       190       200       210       220     

>>NP_001030005 (OMIM: 224230,606470,613987) H/ACA ribonu  (90 aa)
 initn: 124 init1: 124 opt: 124  Z-score: 178.9  bits: 38.2 E(85289): 0.0032
Smith-Waterman score: 124; 41.9% identity (76.7% similar) in 43 aa overlap (7-49:32-74)

                                       10        20        30      
pF1KE5                         MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLR
                                     :: : :::. .::.::   .... . ::.:
NP_001 TKIKADPDGPEAQAEACSGERTYQELLVNQNPIAQPLASRRLTRKLYKCIKKAVKQKQIR
              10        20        30        40        50        60 

         40        50        60        70        80        90      
pF1KE5 KGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVS
       .:..:. : .:.:                                               
NP_001 RGVKEVQKFVNKGEKGTWVQPQAPSAPPV                               
              70        80        90                               




128 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:39:24 2016 done: Mon Nov  7 21:39:25 2016
 Total Scan time:  3.850 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]