FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5126, 141 aa
  1>>>pF1KE5126 141 - 141 aa - 141 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1438+/-0.00035; mu= 12.5732+/- 0.022
 mean_var=64.5914+/-12.953, 0's: 0 Z-trim(113.4): 11  B-trim: 0 in 0/53
 Lambda= 0.159583
 statistics sampled from 22732 (22736) to 22732 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.645), E-opt: 0.2 (0.267), width:  16
 Scan time:  4.180

The best scores are:                                      opt bits E(85289)
NP_001177192 (OMIM: 606997) nuclear nucleic acid-b ( 141)  901 215.7   2e-56
NP_775269 (OMIM: 606997) nuclear nucleic acid-bind ( 141)  901 215.7   2e-56
NP_001177194 (OMIM: 606997) nuclear nucleic acid-b ( 141)  901 215.7   2e-56
NP_006324 (OMIM: 606997) nuclear nucleic acid-bind ( 141)  901 215.7   2e-56


>>NP_001177192 (OMIM: 606997) nuclear nucleic acid-bindi  (141 aa)
 initn: 901 init1: 901 opt: 901  Z-score: 1134.1  bits: 215.7 E(85289): 2e-56
Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
               70        80        90       100       110       120

              130       140 
pF1KE5 ALWEPKSKNASKVANKGKSKS
       :::::::::::::::::::::
NP_001 ALWEPKSKNASKVANKGKSKS
              130       140 

>>NP_775269 (OMIM: 606997) nuclear nucleic acid-binding   (141 aa)
 initn: 901 init1: 901 opt: 901  Z-score: 1134.1  bits: 215.7 E(85289): 2e-56
Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_775 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
               70        80        90       100       110       120

              130       140 
pF1KE5 ALWEPKSKNASKVANKGKSKS
       :::::::::::::::::::::
NP_775 ALWEPKSKNASKVANKGKSKS
              130       140 

>>NP_001177194 (OMIM: 606997) nuclear nucleic acid-bindi  (141 aa)
 initn: 901 init1: 901 opt: 901  Z-score: 1134.1  bits: 215.7 E(85289): 2e-56
Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
               70        80        90       100       110       120

              130       140 
pF1KE5 ALWEPKSKNASKVANKGKSKS
       :::::::::::::::::::::
NP_001 ALWEPKSKNASKVANKGKSKS
              130       140 

>>NP_006324 (OMIM: 606997) nuclear nucleic acid-binding   (141 aa)
 initn: 901 init1: 901 opt: 901  Z-score: 1134.1  bits: 215.7 E(85289): 2e-56
Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
               70        80        90       100       110       120

              130       140 
pF1KE5 ALWEPKSKNASKVANKGKSKS
       :::::::::::::::::::::
NP_006 ALWEPKSKNASKVANKGKSKS
              130       140 




141 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:18:48 2016 done: Tue Nov  8 07:18:49 2016
 Total Scan time:  4.180 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]