FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5126, 141 aa
  1>>>pF1KE5126 141 - 141 aa - 141 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2607+/-0.000832; mu= 11.7633+/- 0.050
 mean_var=61.6527+/-12.048, 0's: 0 Z-trim(106.3): 12  B-trim: 0 in 0/51
 Lambda= 0.163342
 statistics sampled from 8885 (8886) to 8885 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.655), E-opt: 0.2 (0.273), width:  16
 Scan time:  1.210

The best scores are:                                      opt bits E(32554)
CCDS1883.1 C1D gene_id:10438|Hs108|chr2            ( 141)  901 220.4 2.9e-58


>>CCDS1883.1 C1D gene_id:10438|Hs108|chr2                 (141 aa)
 initn: 901 init1: 901 opt: 901  Z-score: 1159.5  bits: 220.4 E(32554): 2.9e-58
Smith-Waterman score: 901; 100.0% identity (100.0% similar) in 141 aa overlap (1-141:1-141)

               10        20        30        40        50        60
pF1KE5 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MAGEEINEDYPVEIHEYLSAFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 YTLNSMFWVYLATQGVNPKEHPVKQELERIRVYMNRVKEITDKKKAGKLDRGAASRFVKN
               70        80        90       100       110       120

              130       140 
pF1KE5 ALWEPKSKNASKVANKGKSKS
       :::::::::::::::::::::
CCDS18 ALWEPKSKNASKVANKGKSKS
              130       140 




141 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 07:18:48 2016 done: Tue Nov  8 07:18:48 2016
 Total Scan time:  1.210 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]