FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5125, 98 aa
  1>>>pF1KE5125 98 - 98 aa - 98 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.8013+/-0.000287; mu= 11.5333+/- 0.018
 mean_var=51.4678+/-10.018, 0's: 0 Z-trim(117.4): 5  B-trim: 54 in 1/50
 Lambda= 0.178775
 statistics sampled from 29445 (29449) to 29445 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.345), width:  16
 Scan time:  4.050

The best scores are:                                      opt bits E(85289)
NP_000091 (OMIM: 254800,601145) cystatin-B [Homo s (  98)  647 173.8 3.9e-44
NP_005204 (OMIM: 184600,607936) cystatin-A [Homo s (  98)  345 95.9 1.1e-20


>>NP_000091 (OMIM: 254800,601145) cystatin-B [Homo sapie  (98 aa)
 initn: 647 init1: 647 opt: 647  Z-score: 913.4  bits: 173.8 E(85289): 3.9e-44
Smith-Waterman score: 647; 100.0% identity (100.0% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE5 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG
               10        20        30        40        50        60

               70        80        90        
pF1KE5 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF
       ::::::::::::::::::::::::::::::::::::::
NP_000 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF
               70        80        90        

>>NP_005204 (OMIM: 184600,607936) cystatin-A [Homo sapie  (98 aa)
 initn: 350 init1: 330 opt: 345  Z-score: 492.4  bits: 95.9 E(85289): 1.1e-20
Smith-Waterman score: 345; 53.1% identity (83.7% similar) in 98 aa overlap (1-98:1-98)

               10        20        30        40        50        60
pF1KE5 MMCGAPSATQPATAETQHIADQVRSQLEEKENKKFPVFKAVSFKSQVVAGTNYFIKVHVG
       :. :. : ..::: : :.:.:.:. ::::: :. .  ..::..:.::::::::.:::..:
NP_005 MIPGGLSEAKPATPEIQEIVDKVKPQLEEKTNETYGKLEAVQYKTQVVAGTNYYIKVRAG
               10        20        30        40        50        60

               70        80        90        
pF1KE5 DEDFVHLRVFQSLPHENKPLTLSNYQTNKAKHDELTYF
       :. ..::.::.::: .:. :.:..::..: : :::: :
NP_005 DNKYMHLKVFKSLPGQNEDLVLTGYQVDKNKDDELTGF
               70        80        90        




98 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:38:24 2016 done: Mon Nov  7 21:38:24 2016
 Total Scan time:  4.050 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]