FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5121, 123 aa
  1>>>pF1KE5121 123 - 123 aa - 123 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.8374+/-0.000746; mu= 9.6772+/- 0.045
 mean_var=90.7379+/-17.594, 0's: 0 Z-trim(110.9): 6  B-trim: 0 in 0/50
 Lambda= 0.134642
 statistics sampled from 11950 (11951) to 11950 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.367), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS6858.1 RPL35 gene_id:11224|Hs108|chr9          ( 123)  761 156.6 3.4e-39


>>CCDS6858.1 RPL35 gene_id:11224|Hs108|chr9               (123 aa)
 initn: 761 init1: 761 opt: 761  Z-score: 817.1  bits: 156.6 E(32554): 3.4e-39
Smith-Waterman score: 761; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)

               10        20        30        40        50        60
pF1KE5 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQRKERLYPLRKYA
               70        80        90       100       110       120

          
pF1KE5 VKA
       :::
CCDS68 VKA
          




123 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:36:53 2016 done: Mon Nov  7 21:36:54 2016
 Total Scan time:  1.400 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]