Result of FASTA (omim) for
pFN21AE5119
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5119, 154 aa
1>>>pF1KE5119 154 - 154 aa - 154 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3065+/-0.000331; mu= 11.2192+/- 0.020
mean_var=56.4459+/-11.199, 0's: 0 Z-trim(113.6): 21 B-trim: 0 in 0/51
Lambda= 0.170710
statistics sampled from 23081 (23090) to 23081 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.675), E-opt: 0.2 (0.271), width: 16
Scan time: 4.020
The best scores are: opt bits E(85289)
NP_001137234 (OMIM: 600187) eukaryotic translation ( 154) 1017 258.4 3.4e-69
NP_001961 (OMIM: 600187) eukaryotic translation in ( 154) 1017 258.4 3.4e-69
NP_001137233 (OMIM: 600187) eukaryotic translation ( 154) 1017 258.4 3.4e-69
XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic ( 154) 1017 258.4 3.4e-69
NP_001137232 (OMIM: 600187) eukaryotic translation ( 184) 1017 258.4 4e-69
NP_065123 (OMIM: 605782) eukaryotic translation in ( 153) 865 220.9 6.2e-58
>>NP_001137234 (OMIM: 600187) eukaryotic translation ini (154 aa)
initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001961 (OMIM: 600187) eukaryotic translation initia (154 aa)
initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137233 (OMIM: 600187) eukaryotic translation ini (154 aa)
initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
NP_001 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>XP_005256566 (OMIM: 600187) PREDICTED: eukaryotic tran (154 aa)
initn: 1017 init1: 1017 opt: 1017 Z-score: 1363.3 bits: 258.4 E(85289): 3.4e-69
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:1-154)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
::::::::::::::::::::::::::::::::::
XP_005 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
130 140 150
>>NP_001137232 (OMIM: 600187) eukaryotic translation ini (184 aa)
initn: 1017 init1: 1017 opt: 1017 Z-score: 1362.1 bits: 258.4 E(85289): 4e-69
Smith-Waterman score: 1017; 100.0% identity (100.0% similar) in 154 aa overlap (1-154:31-184)
10 20 30
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGF
::::::::::::::::::::::::::::::
NP_001 MCGTGGTDSKTRRPPHRASFLKRLESKPLKMADDLDFETGDAGASATFPMQCSALRKNGF
10 20 30 40 50 60
40 50 60 70 80 90
pF1KE5 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQ
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE5 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLSAMTEEAAVAIK
130 140 150 160 170 180
pF1KE5 AMAK
::::
NP_001 AMAK
>>NP_065123 (OMIM: 605782) eukaryotic translation initia (153 aa)
initn: 865 init1: 865 opt: 865 Z-score: 1161.1 bits: 220.9 E(85289): 6.2e-58
Smith-Waterman score: 865; 84.0% identity (94.7% similar) in 150 aa overlap (1-150:1-150)
10 20 30 40 50 60
pF1KE5 MADDLDFETGDAGASATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
:::..:: :::::::.:.::::::::::::::::::::::::::::::::::::::::::
NP_065 MADEIDFTTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 IDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLG
::::::::::::::::::::::::::::.::: ::::::::: ..:::::::.::::.::
NP_065 IDIFTGKKYEDICPSTHNMDVPNIKRNDYQLICIQDGYLSLLTETGEVREDLKLPEGELG
70 80 90 100 110 120
130 140 150
pF1KE5 KEIEQKYDCGEEILITVLSAMTEEAAVAIKAMAK
:::: ::. ::.. ..:. ::.:: :::::
NP_065 KEIEGKYNAGEDVQVSVMCAMSEEYAVAIKPCK
130 140 150
154 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 21:35:32 2016 done: Mon Nov 7 21:35:33 2016
Total Scan time: 4.020 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]