FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5113, 158 aa
  1>>>pF1KE5113 158 - 158 aa - 158 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9425+/-0.000381; mu= 13.5426+/- 0.024
 mean_var=55.6084+/-11.526, 0's: 0 Z-trim(110.8): 19  B-trim: 0 in 0/50
 Lambda= 0.171990
 statistics sampled from 19275 (19277) to 19275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.618), E-opt: 0.2 (0.226), width:  16
 Scan time:  4.670

The best scores are:                                      opt bits E(85289)
NP_001006 (OMIM: 180471) 40S ribosomal protein S11 ( 158) 1044 267.1 8.6e-72


>>NP_001006 (OMIM: 180471) 40S ribosomal protein S11 [Ho  (158 aa)
 initn: 1044 init1: 1044 opt: 1044  Z-score: 1409.9  bits: 267.1 E(85289): 8.6e-72
Smith-Waterman score: 1044; 100.0% identity (100.0% similar) in 158 aa overlap (1-158:1-158)

               10        20        30        40        50        60
pF1KE5 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MADIQTERAYQKQPTIFQNKKRVLLGETGKEKLPRYYKNIGLGFKTPKEAIEGTYIDKKC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDV
               70        80        90       100       110       120

              130       140       150        
pF1KE5 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
       ::::::::::::::::::::::::::::::::::::::
NP_001 QIGDIVTVGECRPLSKTVRFNVLKVTKAAGTKKQFQKF
              130       140       150        




158 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:27:53 2016 done: Mon Nov  7 21:27:54 2016
 Total Scan time:  4.670 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]