FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5111, 113 aa
  1>>>pF1KE5111 113 - 113 aa - 113 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0865+/-0.000707; mu= 10.5914+/- 0.043
 mean_var=52.0481+/-10.512, 0's: 0 Z-trim(107.7): 9  B-trim: 270 in 1/51
 Lambda= 0.177776
 statistics sampled from 9751 (9755) to 9751 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.713), E-opt: 0.2 (0.3), width:  16
 Scan time:  1.490

The best scores are:                                      opt bits E(32554)
CCDS11403.1 EIF1 gene_id:10209|Hs108|chr17         ( 113)  756 201.2 1.1e-52
CCDS2690.1 EIF1B gene_id:10289|Hs108|chr3          ( 113)  714 190.5 1.9e-49


>>CCDS11403.1 EIF1 gene_id:10209|Hs108|chr17              (113 aa)
 initn: 756 init1: 756 opt: 756  Z-score: 1059.3  bits: 201.2 E(32554): 1.1e-52
Smith-Waterman score: 756; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE5 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE5 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF
               70        80        90       100       110   

>>CCDS2690.1 EIF1B gene_id:10289|Hs108|chr3               (113 aa)
 initn: 714 init1: 714 opt: 714  Z-score: 1001.1  bits: 190.5 E(32554): 1.9e-49
Smith-Waterman score: 714; 92.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)

               10        20        30        40        50        60
pF1KE5 MSAIQNLHSFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
       ::.::::.::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS26 MSTIQNLQSFDPFADATKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLV
               10        20        30        40        50        60

               70        80        90       100       110   
pF1KE5 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF
       :::::::::::::::::::::::::::::::::::::.:.:..:..:::::::
CCDS26 KAFKKKFACNGTVIEHPEYGEVIQLQGDQRKNICQFLLEVGIVKEEQLKVHGF
               70        80        90       100       110   




113 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:26:34 2016 done: Mon Nov  7 21:26:34 2016
 Total Scan time:  1.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]