FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5109, 159 aa
  1>>>pF1KE5109 159 - 159 aa - 159 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1080+/-0.000656; mu= 12.9385+/- 0.039
 mean_var=59.2724+/-12.250, 0's: 0 Z-trim(109.8): 5  B-trim: 7 in 1/51
 Lambda= 0.166590
 statistics sampled from 11109 (11113) to 11109 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.341), width:  16
 Scan time:  1.880

The best scores are:                                      opt bits E(32554)
CCDS31678.1 SDHD gene_id:6392|Hs108|chr11          ( 159) 1085 268.4 1.3e-72
CCDS60958.1 SDHD gene_id:6392|Hs108|chr11          ( 143)  725 181.9 1.3e-46
CCDS60960.1 SDHD gene_id:6392|Hs108|chr11          ( 120)  680 171.0   2e-43
CCDS60959.1 SDHD gene_id:6392|Hs108|chr11          (  85)  401 103.9 2.3e-23


>>CCDS31678.1 SDHD gene_id:6392|Hs108|chr11               (159 aa)
 initn: 1085 init1: 1085 opt: 1085  Z-score: 1417.2  bits: 268.4 E(32554): 1.3e-72
Smith-Waterman score: 1085; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)

               10        20        30        40        50        60
pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL
               70        80        90       100       110       120

              130       140       150         
pF1KE5 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
       :::::::::::::::::::::::::::::::::::::::
CCDS31 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
              130       140       150         

>>CCDS60958.1 SDHD gene_id:6392|Hs108|chr11               (143 aa)
 initn: 725 init1: 725 opt: 725  Z-score: 950.3  bits: 181.9 E(32554): 1.3e-46
Smith-Waterman score: 725; 100.0% identity (100.0% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS60 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWLECNGAILARHDLGS
               70        80        90       100       110       120

              130       140       150         
pF1KE5 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
                                              
CCDS60 ARSQLTATSAFRVQAILLPQPPK                
              130       140                   

>>CCDS60960.1 SDHD gene_id:6392|Hs108|chr11               (120 aa)
 initn: 680 init1: 680 opt: 680  Z-score: 893.1  bits: 171.0 E(32554): 2e-43
Smith-Waterman score: 714; 75.5% identity (75.5% similar) in 159 aa overlap (1-159:1-120)

               10        20        30        40        50        60
pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK
       ::::::::::::::::::                                       :::
CCDS60 MAVLWRLSAVCGALGGRA---------------------------------------GSK
               10                                               20 

               70        80        90       100       110       120
pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL
              30        40        50        60        70        80 

              130       140       150         
pF1KE5 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
       :::::::::::::::::::::::::::::::::::::::
CCDS60 QKAAKAGLLALSALTFAGLCYFNYHDVGICKAVAMLWKL
              90       100       110       120

>>CCDS60959.1 SDHD gene_id:6392|Hs108|chr11               (85 aa)
 initn: 441 init1: 401 opt: 401  Z-score: 533.0  bits: 103.9 E(32554): 2.3e-23
Smith-Waterman score: 407; 73.4% identity (86.1% similar) in 79 aa overlap (1-79:1-70)

               10        20        30        40        50        60
pF1KE5 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHHSGSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::    
CCDS60 MAVLWRLSAVCGALGGRALLLRTPVVRPAHISAFLQDRPIPEWCGVQHIHLSPSHH----
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KE5 AASLHWTSERVVSVLLLGLLPAAYLNPCSAMDYSLAAALTLHGHWGLGQVVTDYVHGDAL
            :. .... ....:.                                         
CCDS60 -----WALDKLLLTMFMGMPCRKLPRQGFWHFQL                          
              60        70        80                               




159 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:24:38 2016 done: Mon Nov  7 21:24:39 2016
 Total Scan time:  1.880 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]