FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5108, 138 aa
  1>>>pF1KE5108 138 - 138 aa - 138 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7459+/-0.000612; mu= 2.5912+/- 0.037
 mean_var=148.0243+/-29.583, 0's: 0 Z-trim(118.0): 1  B-trim: 1152 in 1/50
 Lambda= 0.105416
 statistics sampled from 18838 (18839) to 18838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.579), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS41454.1 KISS1 gene_id:3814|Hs108|chr1          ( 138)  945 153.4 4.2e-38


>>CCDS41454.1 KISS1 gene_id:3814|Hs108|chr1               (138 aa)
 initn: 945 init1: 945 opt: 945  Z-score: 797.5  bits: 153.4 E(32554): 4.2e-38
Smith-Waterman score: 945; 100.0% identity (100.0% similar) in 138 aa overlap (1-138:1-138)

               10        20        30        40        50        60
pF1KE5 MNSLVSWQLLLFLCATHFGEPLEKVASVGNSRPTGQQLESLGLLAPGEQSLPCTERKPAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MNSLVSWQLLLFLCATHFGEPLEKVASVGNSRPTGQQLESLGLLAPGEQSLPCTERKPAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 TARLSRRGTSLSPPPESSGSPQQPGLSAPHSRQIPAPQGAVLVQREKDLPNYNWNSFGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 TARLSRRGTSLSPPPESSGSPQQPGLSAPHSRQIPAPQGAVLVQREKDLPNYNWNSFGLR
               70        80        90       100       110       120

              130        
pF1KE5 FGKREAAPGNHGRSAGRG
       ::::::::::::::::::
CCDS41 FGKREAAPGNHGRSAGRG
              130        




138 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 21:23:56 2016 done: Mon Nov  7 21:23:57 2016
 Total Scan time:  1.970 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]