FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5087, 79 aa
  1>>>pF1KE5087 79 - 79 aa - 79 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.3400+/-0.000564; mu= 12.9872+/- 0.034
 mean_var=53.4135+/-11.035, 0's: 0 Z-trim(111.6): 9  B-trim: 660 in 1/50
 Lambda= 0.175488
 statistics sampled from 12543 (12547) to 12543 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.385), width:  16
 Scan time:  1.170

The best scores are:                                      opt bits E(32554)
CCDS13264.1 ROMO1 gene_id:140823|Hs108|chr20       (  79)  556 147.5 8.1e-37


>>CCDS13264.1 ROMO1 gene_id:140823|Hs108|chr20            (79 aa)
 initn: 556 init1: 556 opt: 556  Z-score: 774.5  bits: 147.5 E(32554): 8.1e-37
Smith-Waterman score: 556; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE5 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPVAVGPYGQSQPSCFDRVKMGFVMGCAVGMAAGALFGTFSCLRIGMRGRELMGGIGKTM
               10        20        30        40        50        60

               70         
pF1KE5 MQSGGTFGTFMAIGMGIRC
       :::::::::::::::::::
CCDS13 MQSGGTFGTFMAIGMGIRC
               70         




79 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:54:09 2016 done: Tue Nov  8 04:54:09 2016
 Total Scan time:  1.170 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]