FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5086, 79 aa
  1>>>pF1KE5086 79 - 79 aa - 79 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.6935+/-0.000461; mu= 10.4828+/- 0.028
 mean_var=49.3974+/- 9.726, 0's: 0 Z-trim(114.8): 3  B-trim: 0 in 0/51
 Lambda= 0.182483
 statistics sampled from 15318 (15320) to 15318 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.857), E-opt: 0.2 (0.471), width:  16
 Scan time:  1.280

The best scores are:                                      opt bits E(32554)
CCDS3257.1 CAMK2N2 gene_id:94032|Hs108|chr3        (  79)  538 148.0 5.7e-37
CCDS207.1 CAMK2N1 gene_id:55450|Hs108|chr1         (  78)  352 99.0 3.1e-22


>>CCDS3257.1 CAMK2N2 gene_id:94032|Hs108|chr3             (79 aa)
 initn: 538 init1: 538 opt: 538  Z-score: 777.3  bits: 148.0 E(32554): 5.7e-37
Smith-Waterman score: 538; 100.0% identity (100.0% similar) in 79 aa overlap (1-79:1-79)

               10        20        30        40        50        60
pF1KE5 MSEILPYSEDKMGRFGADPEGSDLSFSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVVIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSEILPYSEDKMGRFGADPEGSDLSFSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVVIE
               10        20        30        40        50        60

               70         
pF1KE5 DDRIDDVLKGMGEKPPSGV
       :::::::::::::::::::
CCDS32 DDRIDDVLKGMGEKPPSGV
               70         

>>CCDS207.1 CAMK2N1 gene_id:55450|Hs108|chr1              (78 aa)
 initn: 296 init1: 296 opt: 352  Z-score: 512.7  bits: 99.0 E(32554): 3.1e-22
Smith-Waterman score: 352; 65.4% identity (87.7% similar) in 81 aa overlap (1-79:1-78)

               10        20          30        40        50        
pF1KE5 MSEILPYSEDKMGRFGADPEGSDLS--FSCRLQDTNSFFAGNQAKRPPKLGQIGRAKRVV
       :::.:::...:.. .:   .:.:..  :::::::::.::...: :::::::::::.::::
CCDS20 MSEVLPYGDEKLSPYG---DGGDVGQIFSCRLQDTNNFFGAGQNKRPPKLGQIGRSKRVV
               10           20        30        40        50       

       60        70         
pF1KE5 IEDDRIDDVLKGMGEKPPSGV
       :::::::::::.: .: : ::
CCDS20 IEDDRIDDVLKNMTDKAPPGV
        60        70        




79 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:53:35 2016 done: Tue Nov  8 04:53:35 2016
 Total Scan time:  1.280 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]