Result of FASTA (omim) for
pFN21AE5082
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5082, 683 aa
1>>>pF1KE5082 683 - 683 aa - 683 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.7516+/-0.000342; mu= 9.2035+/- 0.022
mean_var=150.2989+/-29.648, 0's: 0 Z-trim(119.2): 23 B-trim: 57 in 1/58
Lambda= 0.104616
statistics sampled from 33021 (33044) to 33021 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.718), E-opt: 0.2 (0.387), width: 16
Scan time: 8.990
The best scores are: opt bits E(85289)
NP_004689 (OMIM: 601414,607301) U4/U6 small nuclea ( 683) 4447 683.2 8.7e-196
XP_011508431 (OMIM: 601414,607301) PREDICTED: U4/U ( 548) 3568 550.5 6.3e-156
XP_011508432 (OMIM: 601414,607301) PREDICTED: U4/U ( 539) 3515 542.5 1.6e-153
XP_016858279 (OMIM: 601414,607301) PREDICTED: U4/U ( 539) 3515 542.5 1.6e-153
XP_011508433 (OMIM: 601414,607301) PREDICTED: U4/U ( 431) 2782 431.8 2.7e-120
XP_011508434 (OMIM: 601414,607301) PREDICTED: U4/U ( 416) 2607 405.3 2.3e-112
XP_016858280 (OMIM: 601414,607301) PREDICTED: U4/U ( 362) 2233 348.9 2e-95
>>NP_004689 (OMIM: 601414,607301) U4/U6 small nuclear ri (683 aa)
initn: 4447 init1: 4447 opt: 4447 Z-score: 3636.0 bits: 683.2 E(85289): 8.7e-196
Smith-Waterman score: 4447; 100.0% identity (100.0% similar) in 683 aa overlap (1-683:1-683)
10 20 30 40 50 60
pF1KE5 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE5 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE5 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH
610 620 630 640 650 660
670 680
pF1KE5 FKKHGAEHYWDLALSESVLESTD
:::::::::::::::::::::::
NP_004 FKKHGAEHYWDLALSESVLESTD
670 680
>>XP_011508431 (OMIM: 601414,607301) PREDICTED: U4/U6 sm (548 aa)
initn: 3568 init1: 3568 opt: 3568 Z-score: 2920.4 bits: 550.5 E(85289): 6.3e-156
Smith-Waterman score: 3568; 100.0% identity (100.0% similar) in 548 aa overlap (136-683:1-548)
110 120 130 140 150 160
pF1KE5 SGVKKRRIPRFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISP
::::::::::::::::::::::::::::::
XP_011 MLTKLQIKQMMEAATRQIEERKKQLSFISP
10 20 30
170 180 190 200 210 220
pF1KE5 PTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PTPQPKTPSSSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIG
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE5 NANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NANMVGLANLHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANI
100 110 120 130 140 150
290 300 310 320 330 340
pF1KE5 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RAVKREQFKQQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTK
160 170 180 190 200 210
350 360 370 380 390 400
pF1KE5 AQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AQLEKLQAEISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEEN
220 230 240 250 260 270
410 420 430 440 450 460
pF1KE5 PKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PKREDYFGITNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVR
280 290 300 310 320 330
470 480 490 500 510 520
pF1KE5 LGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LGLMPPPEPKVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQR
340 350 360 370 380 390
530 540 550 560 570 580
pF1KE5 KVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVKKIKKLKEDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVE
400 410 420 430 440 450
590 600 610 620 630 640
pF1KE5 GGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGPKAQKKFKRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGE
460 470 480 490 500 510
650 660 670 680
pF1KE5 MKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD
::::::::::::::::::::::::::::::::::::::
XP_011 MKFKQCPTENMAREHFKKHGAEHYWDLALSESVLESTD
520 530 540
>>XP_011508432 (OMIM: 601414,607301) PREDICTED: U4/U6 sm (539 aa)
initn: 3515 init1: 3515 opt: 3515 Z-score: 2877.2 bits: 542.5 E(85289): 1.6e-153
Smith-Waterman score: 3515; 100.0% identity (100.0% similar) in 539 aa overlap (145-683:1-539)
120 130 140 150 160 170
pF1KE5 RFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPS
::::::::::::::::::::::::::::::
XP_011 MMEAATRQIEERKKQLSFISPPTPQPKTPS
10 20 30
180 190 200 210 220 230
pF1KE5 SSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLAN
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE5 LHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFK
100 110 120 130 140 150
300 310 320 330 340 350
pF1KE5 QQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAE
160 170 180 190 200 210
360 370 380 390 400 410
pF1KE5 ISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGI
220 230 240 250 260 270
420 430 440 450 460 470
pF1KE5 TNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEP
280 290 300 310 320 330
480 490 500 510 520 530
pF1KE5 KVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLK
340 350 360 370 380 390
540 550 560 570 580 590
pF1KE5 EDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKF
400 410 420 430 440 450
600 610 620 630 640 650
pF1KE5 KRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTE
460 470 480 490 500 510
660 670 680
pF1KE5 NMAREHFKKHGAEHYWDLALSESVLESTD
:::::::::::::::::::::::::::::
XP_011 NMAREHFKKHGAEHYWDLALSESVLESTD
520 530
>>XP_016858279 (OMIM: 601414,607301) PREDICTED: U4/U6 sm (539 aa)
initn: 3515 init1: 3515 opt: 3515 Z-score: 2877.2 bits: 542.5 E(85289): 1.6e-153
Smith-Waterman score: 3515; 100.0% identity (100.0% similar) in 539 aa overlap (145-683:1-539)
120 130 140 150 160 170
pF1KE5 RFEEVEEEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPS
::::::::::::::::::::::::::::::
XP_016 MMEAATRQIEERKKQLSFISPPTPQPKTPS
10 20 30
180 190 200 210 220 230
pF1KE5 SSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SSQPERLPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLAN
40 50 60 70 80 90
240 250 260 270 280 290
pF1KE5 LHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHAMGIAPPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFK
100 110 120 130 140 150
300 310 320 330 340 350
pF1KE5 QQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QQLKEKPSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAE
160 170 180 190 200 210
360 370 380 390 400 410
pF1KE5 ISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ISQAARKTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGI
220 230 240 250 260 270
420 430 440 450 460 470
pF1KE5 TNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TNLVEHPAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEP
280 290 300 310 320 330
480 490 500 510 520 530
pF1KE5 KVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KVRISNLMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLK
340 350 360 370 380 390
540 550 560 570 580 590
pF1KE5 EDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EDISQGVHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKF
400 410 420 430 440 450
600 610 620 630 640 650
pF1KE5 KRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KRLMLHRIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTE
460 470 480 490 500 510
660 670 680
pF1KE5 NMAREHFKKHGAEHYWDLALSESVLESTD
:::::::::::::::::::::::::::::
XP_016 NMAREHFKKHGAEHYWDLALSESVLESTD
520 530
>>XP_011508433 (OMIM: 601414,607301) PREDICTED: U4/U6 sm (431 aa)
initn: 2782 init1: 2782 opt: 2782 Z-score: 2280.8 bits: 431.8 E(85289): 2.7e-120
Smith-Waterman score: 2782; 100.0% identity (100.0% similar) in 427 aa overlap (1-427:1-427)
10 20 30 40 50 60
pF1KE5 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
:::::::
XP_011 PAQLNPPGIIE
430
>>XP_011508434 (OMIM: 601414,607301) PREDICTED: U4/U6 sm (416 aa)
initn: 2607 init1: 2607 opt: 2607 Z-score: 2138.2 bits: 405.3 E(85289): 2.3e-112
Smith-Waterman score: 2607; 98.5% identity (99.3% similar) in 408 aa overlap (1-408:1-408)
10 20 30 40 50 60
pF1KE5 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
::::::::::::::::::::::::::::::::::::::::: . . .:
XP_011 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLGKSQERRLFWNHKSC
370 380 390 400 410
430 440 450 460 470 480
pF1KE5 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
>>XP_016858280 (OMIM: 601414,607301) PREDICTED: U4/U6 sm (362 aa)
initn: 2233 init1: 2233 opt: 2233 Z-score: 1834.1 bits: 348.9 E(85289): 2e-95
Smith-Waterman score: 2233; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KE5 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
:::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKYRGKSQERRLFWNHK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
XP_016 SC
683 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:51:12 2016 done: Tue Nov 8 04:51:13 2016
Total Scan time: 8.990 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]