FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5082, 683 aa
  1>>>pF1KE5082 683 - 683 aa - 683 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3558+/-0.000853; mu= 11.6433+/- 0.052
 mean_var=135.4521+/-27.027, 0's: 0 Z-trim(111.4): 18  B-trim: 13 in 1/50
 Lambda= 0.110200
 statistics sampled from 12341 (12355) to 12341 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.715), E-opt: 0.2 (0.38), width:  16
 Scan time:  3.070

The best scores are:                                      opt bits E(32554)
CCDS951.1 PRPF3 gene_id:9129|Hs108|chr1            ( 683) 4447 718.6 7.3e-207


>>CCDS951.1 PRPF3 gene_id:9129|Hs108|chr1                 (683 aa)
 initn: 4447 init1: 4447 opt: 4447  Z-score: 3827.3  bits: 718.6 E(32554): 7.3e-207
Smith-Waterman score: 4447; 100.0% identity (100.0% similar) in 683 aa overlap (1-683:1-683)

               10        20        30        40        50        60
pF1KE5 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MALSKRELDELKPWIEKTVKRVLGFSEPTVVTAALNCVGKGMDKKKAADHLKPFLDDSTL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RFVDKLFEAVEEGRSSRHSKSSSDRSRKRELKEVFGDDSEISKESSGVKKRRIPRFEEVE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 EEPEVIPGPPSESPGMLTKLQIKQMMEAATRQIEERKKQLSFISPPTPQPKTPSSSQPER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LPIGNTIQPSQAATFMNDAIEKARKAAELQARIQAQLALKPGLIGNANMVGLANLHAMGI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE5 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 APPKVELKDQTKPTPLILDEQGRTVDATGKEIELTHRMPTLKANIRAVKREQFKQQLKEK
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE5 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PSEDMESNTFFDPRVSIAPSQRQRRTFKFHDKGKFEKIAQRLRTKAQLEKLQAEISQAAR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE5 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 KTGIHTSTRLALIAPKKELKEGDIPEIEWWDSYIIPNGFDLTEENPKREDYFGITNLVEH
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE5 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 PAQLNPPVDNDTPVTLGVYLTKKEQKKLRRQTRREAQKELQEKVRLGLMPPPEPKVRISN
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE5 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LMRVLGTEAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTAEQRKVKKIKKLKEDISQG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE5 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 VHISVYRVRNLSNPAKKFKIEANAGQLYLTGVVVLHKDVNVVVVEGGPKAQKKFKRLMLH
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE5 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RIKWDEQTSNTKGDDDEESDEEAVKKTNKCVLVWEGTAKDRSFGEMKFKQCPTENMAREH
              610       620       630       640       650       660

              670       680   
pF1KE5 FKKHGAEHYWDLALSESVLESTD
       :::::::::::::::::::::::
CCDS95 FKKHGAEHYWDLALSESVLESTD
              670       680   




683 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:51:11 2016 done: Tue Nov  8 04:51:11 2016
 Total Scan time:  3.070 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]