Result of FASTA (ccds) for
pFN21AE5073
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5073, 129 aa
1>>>pF1KE5073 129 - 129 aa - 129 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0920+/-0.000656; mu= 12.5212+/- 0.039
mean_var=76.4321+/-15.691, 0's: 0 Z-trim(111.4): 41 B-trim: 0 in 0/51
Lambda= 0.146702
statistics sampled from 12322 (12362) to 12322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.38), width: 16
Scan time: 1.450
The best scores are: opt bits E(32554)
CCDS13326.1 JPH2 gene_id:57158|Hs108|chr20 ( 129) 973 214.3 1.7e-56
CCDS13325.1 JPH2 gene_id:57158|Hs108|chr20 ( 696) 953 210.7 1.1e-54
CCDS6217.1 JPH1 gene_id:56704|Hs108|chr8 ( 661) 830 184.6 7.3e-47
CCDS10962.1 JPH3 gene_id:57338|Hs108|chr16 ( 748) 824 183.4 1.9e-46
CCDS9603.1 JPH4 gene_id:84502|Hs108|chr14 ( 628) 634 143.1 2.2e-34
>>CCDS13326.1 JPH2 gene_id:57158|Hs108|chr20 (129 aa)
initn: 973 init1: 973 opt: 973 Z-score: 1127.9 bits: 214.3 E(32554): 1.7e-56
Smith-Waterman score: 973; 100.0% identity (100.0% similar) in 129 aa overlap (1-129:1-129)
10 20 30 40 50 60
pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT
70 80 90 100 110 120
pF1KE5 ETYADGGMC
:::::::::
CCDS13 ETYADGGMC
>>CCDS13325.1 JPH2 gene_id:57158|Hs108|chr20 (696 aa)
initn: 953 init1: 953 opt: 953 Z-score: 1095.2 bits: 210.7 E(32554): 1.1e-54
Smith-Waterman score: 953; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT
70 80 90 100 110 120
pF1KE5 ETYADGGMC
:::::::
CCDS13 ETYADGGTYQGQFTNGMRHGYGVRQSVPYGMAVVVRSPLRTSLSSLRSEHSNGTVAPDSP
130 140 150 160 170 180
>>CCDS6217.1 JPH1 gene_id:56704|Hs108|chr8 (661 aa)
initn: 830 init1: 830 opt: 830 Z-score: 954.8 bits: 184.6 E(32554): 7.3e-47
Smith-Waterman score: 830; 80.3% identity (95.3% similar) in 127 aa overlap (1-127:1-127)
10 20 30 40 50 60
pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTF
:.::::::::::.:::::: :::::::.::::::::::::::. ::::.: ::::::::.
CCDS62 MTGGRFDFDDGGTYCGGWEEGKAHGHGICTGPKGQGEYSGSWSHGFEVVGGYTWPSGNTY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 EGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYGT
.:::.::::::::.::::.:.:.:::.::::::::.::: . :.:::::.::::::::.
CCDS62 QGYWAQGKRHGLGVETKGKWMYRGEWSHGFKGRYGVRQSLCTPARYEGTWSNGLQDGYGV
70 80 90 100 110 120
pF1KE5 ETYADGGMC
:::.:::
CCDS62 ETYGDGGTYQGQWAGGMRHGYGVRQSVPYGMATVIRSPLRTSLASLRSEQSNGSVLHDAA
130 140 150 160 170 180
>>CCDS10962.1 JPH3 gene_id:57338|Hs108|chr16 (748 aa)
initn: 824 init1: 824 opt: 824 Z-score: 947.2 bits: 183.4 E(32554): 1.9e-46
Smith-Waterman score: 824; 80.2% identity (96.0% similar) in 126 aa overlap (2-127:3-128)
10 20 30 40 50
pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNT
:::::.:::::.:::::: :::::::.::::::::::.:::. :::: ::::::::::
CCDS10 MSSGGRFNFDDGGSYCGGWEDGKAHGHGVCTGPKGQGEYTGSWSHGFEVLGVYTWPSGNT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 FEGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYG
..: :.::::::.:.:.::.:.::::::::::::::.:. ...::::::::.::::::::
CCDS10 YQGTWAQGKRHGIGLESKGKWVYKGEWTHGFKGRYGVRECAGNGAKYEGTWSNGLQDGYG
70 80 90 100 110 120
120
pF1KE5 TETYADGGMC
::::.:::
CCDS10 TETYSDGGTYQGQWVGGMRQGYGVRQSVPYGMAAVIRSPLRTSINSLRSEHTNGTALHPD
130 140 150 160 170 180
>>CCDS9603.1 JPH4 gene_id:84502|Hs108|chr14 (628 aa)
initn: 630 init1: 509 opt: 634 Z-score: 730.9 bits: 143.1 E(32554): 2.2e-34
Smith-Waterman score: 634; 63.2% identity (84.0% similar) in 125 aa overlap (3-127:4-127)
10 20 30 40 50
pF1KE5 MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNT
::.::::::: : ::::.:.:::.:.:::: .:::::: : ::: ::.: :.:..
CCDS96 MSPGGKFDFDDGGCYVGGWEAGRAHGYGVCTGPGAQGEYSGCWAHGFESLGVFTGPGGHS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 FEGYWSQGKRHGLGIETKGRWLYKGEWTHGFKGRYGIRQSSSSGAKYEGTWNNGLQDGYG
..:.:.::::.:::.: :.:: :.::: :.::: :. .: : : .: : :..:.:::::
CCDS96 YQGHWQQGKREGLGVERKSRWTYRGEWLGGLKGRSGVWESVS-GLRYAGLWKDGFQDGYG
70 80 90 100 110
120
pF1KE5 TETYADGGMC
::::.:::
CCDS96 TETYSDGGTYQGQWQAGKRHGYGVRQSVPYHQAALLRSPRRTSLDSGHSDPPTPPPPLPL
120 130 140 150 160 170
129 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:46:36 2016 done: Tue Nov 8 04:46:36 2016
Total Scan time: 1.450 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]