FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5070, 93 aa
  1>>>pF1KE5070 93 - 93 aa - 93 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6485+/-0.000221; mu= 8.3811+/- 0.014
 mean_var=77.2582+/-15.328, 0's: 0 Z-trim(124.1): 2  B-trim: 368 in 1/60
 Lambda= 0.145916
 statistics sampled from 45060 (45063) to 45060 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.855), E-opt: 0.2 (0.528), width:  16
 Scan time:  4.400

The best scores are:                                      opt bits E(85289)
NP_932062 (OMIM: 611300) la-related protein 6 isof (  93)  603 134.6 2.2e-32
NP_060827 (OMIM: 611300) la-related protein 6 isof ( 491)  444 101.6   1e-21


>>NP_932062 (OMIM: 611300) la-related protein 6 isoform   (93 aa)
 initn: 603 init1: 603 opt: 603  Z-score: 702.3  bits: 134.6 E(85289): 2.2e-32
Smith-Waterman score: 603; 100.0% identity (100.0% similar) in 93 aa overlap (1-93:1-93)

               10        20        30        40        50        60
pF1KE5 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_932 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
               10        20        30        40        50        60

               70        80        90   
pF1KE5 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST
       :::::::::::::::::::::::::::::::::
NP_932 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST
               70        80        90   

>>NP_060827 (OMIM: 611300) la-related protein 6 isoform   (491 aa)
 initn: 444 init1: 444 opt: 444  Z-score: 510.8  bits: 101.6 E(85289): 1e-21
Smith-Waterman score: 444; 93.0% identity (97.2% similar) in 71 aa overlap (1-71:1-71)

               10        20        30        40        50        60
pF1KE5 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MAQSGGEARPGPKTAVQIRVAIQEAEDVDELEDEEEGAETRGAGDPARYLSPGWGSASEE
               10        20        30        40        50        60

               70        80        90                              
pF1KE5 EPSRGHRNRSSVNSRTMLASFIVSSAPSTAPST                           
       :::::: . ..                                                 
NP_060 EPSRGHSGTTASGGENEREDLEQEWKPPDEELIKKLVDQIEFYFSDENLEKDAFLLKHVR
               70        80        90       100       110       120




93 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:45:13 2016 done: Tue Nov  8 04:45:14 2016
 Total Scan time:  4.400 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]