Result of FASTA (omim) for
pFN21AE5013
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5013, 270 aa
1>>>pF1KE5013 270 - 270 aa - 270 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6058+/-0.000383; mu= 2.2449+/- 0.024
mean_var=276.6168+/-56.019, 0's: 0 Z-trim(122.1): 168 B-trim: 0 in 0/58
Lambda= 0.077114
statistics sampled from 39413 (39643) to 39413 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.789), E-opt: 0.2 (0.465), width: 16
Scan time: 5.260
The best scores are: opt bits E(85289)
NP_067016 (OMIM: 142988) homeobox protein Hox-D12 ( 270) 1830 216.1 5.6e-56
NP_776272 (OMIM: 142975) homeobox protein Hox-C12 ( 282) 429 60.2 4.8e-09
NP_067015 (OMIM: 142986) homeobox protein Hox-D11 ( 338) 299 45.9 0.00012
NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [ ( 352) 288 44.7 0.00029
NP_055027 (OMIM: 605559) homeobox protein Hox-C11 ( 304) 276 43.2 0.00067
NP_005514 (OMIM: 142958,605432) homeobox protein H ( 313) 275 43.1 0.00074
NP_059106 (OMIM: 142976,614931) homeobox protein H ( 330) 275 43.2 0.00077
NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [ ( 250) 271 42.6 0.00087
NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [ ( 272) 269 42.4 0.0011
NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [ ( 260) 266 42.1 0.0013
NP_062458 (OMIM: 142985) homeobox protein Hox-D8 i ( 290) 263 41.8 0.0018
NP_002139 (OMIM: 142984,192950) homeobox protein H ( 340) 263 41.9 0.002
XP_011509370 (OMIM: 113200,113300,142989,186000,18 ( 324) 262 41.7 0.0021
NP_078777 (OMIM: 142987) homeobox protein Hox-D1 [ ( 328) 262 41.7 0.0021
NP_000514 (OMIM: 113200,113300,142989,186000,18630 ( 343) 262 41.7 0.0021
NP_001186675 (OMIM: 142985) homeobox protein Hox-D ( 289) 259 41.3 0.0024
NP_061824 (OMIM: 142957) homeobox protein Hox-A10 ( 410) 261 41.7 0.0026
NP_006352 (OMIM: 604607) homeobox protein Hox-B13 ( 284) 256 41.0 0.003
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 255 40.8 0.003
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 254 40.7 0.0032
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 254 40.7 0.0032
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 254 40.9 0.0041
NP_059105 (OMIM: 605560) homeobox protein Hox-C10 ( 342) 253 40.7 0.0043
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 250 40.2 0.0043
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 253 40.8 0.0044
NP_073149 (OMIM: 142970) homeobox protein Hox-C8 [ ( 242) 249 40.1 0.0046
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 253 40.8 0.0048
NP_001186676 (OMIM: 142985) homeobox protein Hox-D ( 106) 241 38.8 0.005
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 250 40.4 0.0052
NP_005915 (OMIM: 600535) homeobox protein MOX-2 [H ( 304) 249 40.2 0.0054
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 247 40.0 0.0057
NP_000513 (OMIM: 140000,142959,176305) homeobox pr ( 388) 250 40.5 0.0059
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 249 40.4 0.0069
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 249 40.4 0.0069
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 249 40.4 0.0069
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 244 39.8 0.0091
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 239 39.0 0.0093
>>NP_067016 (OMIM: 142988) homeobox protein Hox-D12 [Hom (270 aa)
initn: 1830 init1: 1830 opt: 1830 Z-score: 1126.0 bits: 216.1 E(85289): 5.6e-56
Smith-Waterman score: 1830; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)
10 20 30 40 50 60
pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_067 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN
190 200 210 220 230 240
250 260 270
pF1KE5 LSDQQVKIWFQNRRMKKKRVVLREQALALY
::::::::::::::::::::::::::::::
NP_067 LSDQQVKIWFQNRRMKKKRVVLREQALALY
250 260 270
>>NP_776272 (OMIM: 142975) homeobox protein Hox-C12 [Hom (282 aa)
initn: 651 init1: 401 opt: 429 Z-score: 283.4 bits: 60.2 E(85289): 4.8e-09
Smith-Waterman score: 655; 44.6% identity (65.3% similar) in 294 aa overlap (1-270:1-282)
10 20 30 40 50 60
pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP
: :..: :.:: :.:... :.::: :.: .:.:: .:: .:::: :.
NP_776 MGEHNLLNPGFVGPLVNIHTGDTFYFPNFRASGAQLPGLPSLSYPR-------RDNVCSL
10 20 30 40 50
70 80 90 100 110
pF1KE5 AQPAGATAFGGFSQPYLAGSGPLGLQPP---TAKDGPEEQAKFY--APEAAAGP-----E
. :. : .:. :::: :: :..:.:: : . . :..: : : : .: :
NP_776 SWPS-AEPCNGYPQPYL-GS-PVSLNPPFGRTCELARVEDGKGYYREPCAEGGGGGLKRE
60 70 80 90 100 110
120 130 140 150 160
pF1KE5 ERGRTRPSFAPESSLAPAVAALKAA---KYDYA--GVGRATPGSTTLLQGAPCAPGFKDD
:::: :. .: ..: : . : ::::: : : :.. . : ....:
NP_776 ERGRD-PGAGPGAALLPLEPSGPPALGFKYDYAAGGGGGDGGGGAGPPHDPPSCQSLESD
120 130 140 150 160
170 180 190 200 210
pF1KE5 TKGPLNLNMTVQAAGVA---SCLRPSLP------DGLPWGAAPGRARKKRKPYTKQQIAE
... : :: ..::.. : . : : .: :: .:.:::::::.: :.::
NP_776 SSSSL-LNEGNKGAGAGDPGSLVSPLNPGGGLSASGAPWYPINSRSRKKRKPYSKLQLAE
170 180 190 200 210 220
220 230 240 250 260 270
pF1KE5 LENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
::.::::::::.::.:.:::.::::::::::::::::::::::..::::::...
NP_776 LEGEFLVNEFITRQRRRELSDRLNLSDQQVKIWFQNRRMKKKRLLLREQALSFF
230 240 250 260 270 280
>>NP_067015 (OMIM: 142986) homeobox protein Hox-D11 [Hom (338 aa)
initn: 344 init1: 282 opt: 299 Z-score: 204.3 bits: 45.9 E(85289): 0.00012
Smith-Waterman score: 364; 38.8% identity (53.4% similar) in 232 aa overlap (35-260:126-324)
10 20 30 40 50 60
pF1KE5 SLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPA
: ::: . .: : :. ::. :
NP_067 GGGGAGGYAPYYAAAAAAAAAAAAAEEAAMQRELLPPAGRRPDVLFKAPEPVCAAPGPPH
100 110 120 130 140 150
70 80 90 100 110 120
pF1KE5 GATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFAPESS
: . : .. . .. : :. : .: . .:: ::: :: : : : .
NP_067 GPA---GAASNFYSAVGRNGILP----QGFD---QFY--EAAPGPPFAGPQPP--PPPAP
160 170 180 190 200
130 140 150 160 170
pF1KE5 LAPAVAALKAAKYDYAGVG------RATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQA
: :: :. :: : .::::: .:: : : : .::
NP_067 PQPEGAADKGDPRTGAGGGGGSPCTKATPGSEP--KGA--AEGSGGDGEGP---------
210 220 230 240
180 190 200 210 220 230
pF1KE5 AGVASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNR
: :. . : ..:: :.:::: :::: :: ::: ::. : .::..:: .::
NP_067 PGEAGAEKSSS------AVAPQRSRKKRCPYTKYQIRELEREFFFNVYINKEKRLQLSRM
250 260 270 280 290 300
240 250 260 270
pF1KE5 LNLSDQQVKIWFQNRRMKKKRVVLREQALALY
:::.:.::::::::::::.:..
NP_067 LNLTDRQVKIWFQNRRMKEKKLNRDRLQYFTGNPLF
310 320 330
>>NP_055028 (OMIM: 142982) homeobox protein Hox-D9 [Homo (352 aa)
initn: 281 init1: 236 opt: 288 Z-score: 197.4 bits: 44.7 E(85289): 0.00029
Smith-Waterman score: 288; 32.9% identity (58.5% similar) in 207 aa overlap (57-260:146-343)
30 40 50 60 70 80
pF1KE5 SNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPYLAGSGPLGLQ
: .:. ::.. .: .. :. .:
NP_055 VRSWMEPLPGFPGGAGGGGGGGGGGPGRGPSPGPSGPANGRHYG-IKPETRAAPAPATAA
120 130 140 150 160 170
90 100 110 120 130 140
pF1KE5 PPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGVGRAT
:.... ... : ... : .: . : :. .: : .:: .. ::.: ::
NP_055 STTSSSSTSLSSSSKRTECSVARESQGSSGPEFSCNSFLQEKAAAATGGTGPGAGIGAAT
180 190 200 210 220 230
150 160 170 180 190 200
pF1KE5 PGSTTLLQGAPCAPGFKDDTKGP---LNLNMTVQAAGVASCLRPSLPDGLPWGAAPGRAR
:. :. :. .: : :. . .. . : :. : . : : . .:
NP_055 -GT-----GGSSEPSACSDHPIPGCSLKEEEKQHSQPQQQQLDPNNPAA-NWIHARS-TR
240 250 260 270 280
210 220 230 240 250 260
pF1KE5 KKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLR
::: :::: : :::.::: : ...:..: :.. :::...:::::::::::: :..
NP_055 KKRCPYTKYQTLELEKEFLFNMYLTRDRRYEVARILNLTERQVKIWFQNRRMKMKKMSKE
290 300 310 320 330 340
270
pF1KE5 EQALALY
NP_055 KCPKGD
350
>>NP_055027 (OMIM: 605559) homeobox protein Hox-C11 [Hom (304 aa)
initn: 306 init1: 255 opt: 276 Z-score: 191.0 bits: 43.2 E(85289): 0.00067
Smith-Waterman score: 278; 32.4% identity (54.3% similar) in 210 aa overlap (55-260:107-290)
30 40 50 60 70 80
pF1KE5 YFSNLRPNGGQLAALPPISYPRGALPWAATPASCAPAQPAGATAFGGFSQPYLAGSGPLG
:.. . . ..:: .: . : :
NP_055 LEPSGKWHHRNSYSSCYAAADELMHRECLPPSTVTEILMKNEGSYGGHHHPSAPHATPAG
80 90 100 110 120 130
90 100 110 120 130 140
pF1KE5 LQPPTAKDGPEEQA--KFYAPEAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGV
. . :.. :: .:. .: : : :. : :. : . :
NP_055 FYSSVNKNSVLPQAFDRFF-DNAYCG----GGDPPAEPPCSG-----------KGEAKGE
140 150 160 170 180
150 160 170 180 190 200
pF1KE5 GRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAGVASCLRPSLPDGLPWGAAPG--
.: :.: .. : . .. : : . .... . .:. ::::.
NP_055 PEAPPASGLASRAEAGAEAEAEEE----NTNPSSSGSAHSVAKEPAK------GAAPNAP
190 200 210 220 230
210 220 230 240 250 260
pF1KE5 RARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRV
:.:::: ::.: :: ::: ::. : .::..:: .:: :::.:.::::::::::::.:..
NP_055 RTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLTDRQVKIWFQNRRMKEKKL
240 250 260 270 280 290
270
pF1KE5 VLREQALALY
NP_055 SRDRLQYFSGNPLL
300
>>NP_005514 (OMIM: 142958,605432) homeobox protein Hox-A (313 aa)
initn: 319 init1: 258 opt: 275 Z-score: 190.2 bits: 43.1 E(85289): 0.00074
Smith-Waterman score: 282; 35.8% identity (56.6% similar) in 173 aa overlap (88-260:137-299)
60 70 80 90 100 110
pF1KE5 CAPAQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRP
: : : : : . .:: :. . :
NP_005 LAKSSANVYHHPTPAVSSNFYSTVGRNGVLPQAFDQFFETA-YGTPENLASSDYPGDKSA
110 120 130 140 150 160
120 130 140 150 160 170
pF1KE5 SFAPESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQ
.: .. : ..:: :: : . . :. . : : :. . : . . .
NP_005 EKGPPAATATSAAAAAAATGAPATSSSDSGGGGGCRETAAAAEE-KERRRRPESSSSPES
170 180 190 200 210 220
180 190 200 210 220 230
pF1KE5 AAGVASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSN
..: . . :.. :.:::: :::: :: ::: ::. . .::..:: .::
NP_005 SSGHT--------EDKAGGSSGQRTRKKRCPYTKYQIRELEREFFFSVYINKEKRLQLSR
230 240 250 260 270
240 250 260 270
pF1KE5 RLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
:::.:.::::::::::::.:..
NP_005 MLNLTDRQVKIWFQNRRMKEKKINRDRLQYYSANPLL
280 290 300 310
>>NP_059106 (OMIM: 142976,614931) homeobox protein Hox-C (330 aa)
initn: 343 init1: 242 opt: 275 Z-score: 190.0 bits: 43.2 E(85289): 0.00077
Smith-Waterman score: 293; 29.4% identity (56.9% similar) in 255 aa overlap (41-270:84-328)
20 30 40 50 60
pF1KE5 YVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGA----LPWAATPASCAP--AQPA
:.. :.:: .: . .::: : :.
NP_059 APSMDGLGSSCPASHCRDLLPHPVLGRPPAPLGAPQGAVYTDIPAPEAARQCAPPPAPPT
60 70 80 90 100 110
70 80 90 100 110
pF1KE5 GATAFGGFSQPYLAG------SGPLGLQPPTAKDGPEEQAKFYAPEAA-AGPEERGRTR-
...: :.. :. .. : ..:: : . :. : .: : . .:..
NP_059 SSSATLGYGYPFGGSYYGCRLSHNVNLQQKPCAYHPGD--KYPEPSGALPGDDLSSRAKE
120 130 140 150 160 170
120 130 140 150 160
pF1KE5 ----PSFAPESSLAPAVAALKAAKYDYAGV-GRATPGSTTLLQGAPCAPGFKD--DTKG-
:::: . :. .... :. :. : .:. : . :.. ..:
NP_059 FAFYPSFASSYQAMPGYLDVSVVP----GISGHPEPRHDALI---P-VEGYQHWALSNGW
180 190 200 210 220
170 180 190 200 210 220
pF1KE5 PLNLNMTVQAAGVASCLRPSLPDGLPWG---AAPGRARKKRKPYTKQQIAELENEFLVNE
.. . . . : . .:: .: .. :.:::: :::: :. :::.:. ...
NP_059 DSQVYCSKEQSQSAHLWKSPFPDVVPLQPEVSSYRRGRKKRVPYTKVQLKELEKEYAASK
230 240 250 260 270 280
230 240 250 260 270
pF1KE5 FINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
::...::...: :::..:: :::::::.:.:.:: . .: :.
NP_059 FITKEKRRRISATTNLSERQVTIWFQNRRVKEKKVVSKSKAPHLHST
290 300 310 320 330
>>NP_076922 (OMIM: 142964) homeobox protein Hox-B9 [Homo (250 aa)
initn: 277 init1: 243 opt: 271 Z-score: 189.0 bits: 42.6 E(85289): 0.00087
Smith-Waterman score: 294; 29.9% identity (55.2% similar) in 261 aa overlap (23-265:9-247)
10 20 30 40 50
pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPA----
:.: ... . .. : :: ..: : . :.
NP_076 MSISGTLSSYYVDSIISHESEDA--PPAKFPSGQYASSRQPGHAEH
10 20 30 40
60 70 80 90 100
pF1KE5 ----SCA--PAQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDG-PEEQAKFY------AP
::. : :. ..... .: :. .:: : .: .: : .... ::
NP_076 LEFPSCSFQPKAPVFGASWAPLS-PHASGSLPSVYHPYIQPQGVPPAESRYLRTWLEPAP
50 60 70 80 90 100
110 120 130 140 150 160
pF1KE5 EAAAGPEERGRTRPSFAPESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFK
.. :.: :. . . : :. :: . .:. ... : ..:.. ::.
NP_076 RGEAAP---GQGQAAVKAEPLLGAPGELLKQGTPEYSL--ETSAGREAVLSNQ--RPGYG
110 120 130 140 150
170 180 190 200 210 220
pF1KE5 DDTKGPLNLNMTVQAAGVASCLRPSLPD-GLPWGAAPGRARKKRKPYTKQQIAELENEFL
:. : . ::. . . : : . .:::: :::: : :::.:::
NP_076 DNKI----------CEGSEDKERPDQTNPSANWLHARS-SRKKRCPYTKYQTLELEKEFL
160 170 180 190 200
230 240 250 260 270
pF1KE5 VNEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
: ...:..:.:.. ::::..:::::::::::: :.. .::
NP_076 FNMYLTRDRRHEVARLLNLSERQVKIWFQNRRMKMKKMN-KEQGKE
210 220 230 240 250
>>NP_689952 (OMIM: 142956) homeobox protein Hox-A9 [Homo (272 aa)
initn: 269 init1: 242 opt: 269 Z-score: 187.4 bits: 42.4 E(85289): 0.0011
Smith-Waterman score: 287; 32.6% identity (54.3% similar) in 267 aa overlap (11-260:11-264)
10 20 30 40 50
pF1KE5 MCERSLYRAGYVGS-LLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCA
:: : ::. .. : . . : : :. :: : : : :
NP_689 MATTGALGNYYVDSFLLGADAADELSVGRYAP--GTLGQ-PP----RQAATLAEHPDFSP
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 PAQPAGATAFGGFSQP-YLAGSGPLGLQPPTAKDGPEEQAKFY---APEAAAGPE---ER
. . ::.::. .: . ::.. . :.: ... . :: :::.:. :
NP_689 CSFQSKATVFGASWNPVHAAGANAV----PAAVYHHHHHHPYVHPQAPVAAAAPDGRYMR
60 70 80 90 100
120 130 140 150 160
pF1KE5 GRTRP-----SFAPESSLAP---AVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKD
. .: ::: : : :.: . : . : . : :.: . :.
NP_689 SWLEPTPGALSFAGLPSSRPYGIKPEPLSARRGDCPTLDTHTLSLTDYACGSPPVDREKQ
110 120 130 140 150 160
170 180 190 200 210 220
pF1KE5 DTKGPLNLNMTV-QAAGVASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLV
..: .. : . ...: . :. : . : : . .:::: ::::.: :::.:::
NP_689 PSEGAFSENNAENESGGDKPPIDPNNP-AANWLHARS-TRKKRCPYTKHQTLELEKEFLF
170 180 190 200 210 220
230 240 250 260 270
pF1KE5 NEFINRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
: ...:..: :.. :::...:::::::::::: :..
NP_689 NMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKDRAKDE
230 240 250 260 270
>>NP_008828 (OMIM: 142971) homeobox protein Hox-C9 [Homo (260 aa)
initn: 278 init1: 237 opt: 266 Z-score: 185.8 bits: 42.1 E(85289): 0.0013
Smith-Waterman score: 277; 31.9% identity (53.6% similar) in 263 aa overlap (11-260:11-250)
10 20 30 40 50
pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASC--
:: ::.. .. : ... : : : : . : : .: . ::
NP_008 MSATGPISNYYVDSLISHDNED--LLASRFPATG---AHPAAARPSGLVPDCSDFPSCSF
10 20 30 40 50
60 70 80 90 100 110
pF1KE5 APAQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPS
:: . .:... . . : : :: . : . . . : ..: . ::
NP_008 APKPAVFSTSWAPVPSQSSVVYHPYGPQPHLGAD-TRYMRTWLEPLSGA------VSFPS
60 70 80 90 100
120 130 140 150 160 170
pF1KE5 FAPESSLAPAVA--ALKAAKYDYA-GVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMT
: : .. :. : . . : . : ::. : . : .:: : ..: .: .
NP_008 F-PAGGRHYALKPDAYPGRRADCGPGEGRSYP---DYMYG---SPGELRD-RAPQTLP-S
110 120 130 140 150
180 190 200 210 220
pF1KE5 VQAAGVASC--------LRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFI
.: ..:. : :: : . : : . .:::: :::: : :::.::: : ..
NP_008 PEADALAGSKHKEEKADLDPSNPVA-NWIHARS-TRKKRCPYTKYQTLELEKEFLFNMYL
160 170 180 190 200 210
230 240 250 260 270
pF1KE5 NRQKRKELSNRLNLSDQQVKIWFQNRRMKKKRVVLREQALALY
.:..: :.. :::...:::::::::::: :..
NP_008 TRDRRYEVARVLNLTERQVKIWFQNRRMKMKKMNKEKTDKEQS
220 230 240 250 260
270 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:09:15 2016 done: Tue Nov 8 04:09:16 2016
Total Scan time: 5.260 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]