FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE5013, 270 aa
  1>>>pF1KE5013 270 - 270 aa - 270 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.2023+/-0.000878; mu= 4.3925+/- 0.053
 mean_var=252.0074+/-52.367, 0's: 0 Z-trim(114.9): 137  B-trim: 0 in 0/52
 Lambda= 0.080792
 statistics sampled from 15346 (15498) to 15346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.804), E-opt: 0.2 (0.476), width:  16
 Scan time:  2.060

The best scores are:                                      opt bits E(32554)
CCDS46456.1 HOXD12 gene_id:3238|Hs108|chr2         ( 270) 1830 225.5 3.1e-59


>>CCDS46456.1 HOXD12 gene_id:3238|Hs108|chr2              (270 aa)
 initn: 1830 init1: 1830 opt: 1830  Z-score: 1176.9  bits: 225.5 E(32554): 3.1e-59
Smith-Waterman score: 1830; 100.0% identity (100.0% similar) in 270 aa overlap (1-270:1-270)

               10        20        30        40        50        60
pF1KE5 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 MCERSLYRAGYVGSLLNLQSPDSFYFSNLRPNGGQLAALPPISYPRGALPWAATPASCAP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE5 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AQPAGATAFGGFSQPYLAGSGPLGLQPPTAKDGPEEQAKFYAPEAAAGPEERGRTRPSFA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE5 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PESSLAPAVAALKAAKYDYAGVGRATPGSTTLLQGAPCAPGFKDDTKGPLNLNMTVQAAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE5 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 VASCLRPSLPDGLPWGAAPGRARKKRKPYTKQQIAELENEFLVNEFINRQKRKELSNRLN
              190       200       210       220       230       240

              250       260       270
pF1KE5 LSDQQVKIWFQNRRMKKKRVVLREQALALY
       ::::::::::::::::::::::::::::::
CCDS46 LSDQQVKIWFQNRRMKKKRVVLREQALALY
              250       260       270




270 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 04:09:15 2016 done: Tue Nov  8 04:09:15 2016
 Total Scan time:  2.060 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]