Result of FASTA (ccds) for
pFN21AE5002
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE5002, 636 aa
1>>>pF1KE5002 636 - 636 aa - 636 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.2892+/-0.000814; mu= 15.6973+/- 0.050
mean_var=87.3237+/-17.233, 0's: 0 Z-trim(108.9): 13 B-trim: 0 in 0/53
Lambda= 0.137249
statistics sampled from 10486 (10494) to 10486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.322), width: 16
Scan time: 3.850
The best scores are: opt bits E(32554)
CCDS78202.1 PAPOLB gene_id:56903|Hs108|chr7 ( 637) 4169 835.4 0
CCDS9946.1 PAPOLA gene_id:10914|Hs108|chr14 ( 745) 3519 706.8 2.7e-203
CCDS1863.1 PAPOLG gene_id:64895|Hs108|chr2 ( 736) 2539 512.7 6.9e-145
CCDS58334.1 PAPOLA gene_id:10914|Hs108|chr14 ( 285) 1711 348.6 6.9e-96
CCDS58335.1 PAPOLA gene_id:10914|Hs108|chr14 ( 238) 1234 254.1 1.6e-67
>>CCDS78202.1 PAPOLB gene_id:56903|Hs108|chr7 (637 aa)
initn: 4169 init1: 4169 opt: 4169 Z-score: 4459.9 bits: 835.4 E(32554): 0
Smith-Waterman score: 4169; 99.5% identity (100.0% similar) in 636 aa overlap (1-636:2-637)
10 20 30 40 50
pF1KE5 MPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQ
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 MMPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQ
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE5 RRILVLDKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCV
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 RRILVLEKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCV
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE5 APSHVDRSDFFTSFYAKLKLQEEVKDLRAVQEAFVPVIKLCFDGIEIDILFARLALQTIP
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS78 APSHVDRSDFFTSFYAKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIP
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE5 EDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 EDLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSN
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE5 ILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 ILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPV
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE5 WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 WDPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWS
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE5 KLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 KLFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQ
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE5 SFPAPKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 SFPAPKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEM
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE5 GMKITAVHLRRKELHQLLPHHVLQDKKAHSTEGRRLTDLNDSSFDLSAGCENSMSVPSST
::::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 GMKITAMHLRRKELHQLLPHHVLQDKKAHSTEGRRLTDLNDSSFDLSAGCENSMSVPSST
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE5 STMKTGPLISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSGVALNESIPHAVSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS78 STMKTGPLISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSGVALNESIPHAVSQ
550 560 570 580 590 600
600 610 620 630
pF1KE5 PAISPSPKAMVARVVSSTCLISHPDLQETQQQTYLIL
:::::::::::::::::::::::::::::::::::::
CCDS78 PAISPSPKAMVARVVSSTCLISHPDLQETQQQTYLIL
610 620 630
>>CCDS9946.1 PAPOLA gene_id:10914|Hs108|chr14 (745 aa)
initn: 3525 init1: 3245 opt: 3519 Z-score: 3763.3 bits: 706.8 E(32554): 2.7e-203
Smith-Waterman score: 3519; 85.8% identity (93.6% similar) in 625 aa overlap (1-623:1-625)
10 20 30 40 50 60
pF1KE5 MPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQR
::::::::: : :: ..::..::::::.::::::.:::.:::::.:::::::::::::
CCDS99 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RILVLDKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
:::.: :::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS99 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PSHVDRSDFFTSFYAKLKLQEEVKDLRAVQEAFVPVIKLCFDGIEIDILFARLALQTIPE
: :::::::::::: ::::::::::::::.::::::::::::::::::::::::::::::
CCDS99 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNI
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS99 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 LGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVW
:::::::::::::::::::::::.:::::.:::::::.::::::::::.::: :::::::
CCDS99 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWEWPNPVLLKQPEECNLNLPVW
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE5 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSK
::::::::::::::::::::::::::::::.::::::.:::::::::: :::::::::::
CCDS99 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSVSTRMVMVEEFKQGLAITDEILLSKAEWSK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE5 LFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
:::::.::::::::::::::: ::::.:::::::::::::::::::::::::::::::::
CCDS99 LFEAPNFFQKYKHYIVLLASAPTEKQRLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE5 FPAPKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMG
::::::::: ::::::::::: .:: .::: ::.:::::::::::::::::.::::::.
CCDS99 FPAPKENPDKEEFRTMWVIGLVFKKTENSENLSVDLTYDIQSFTDTVYRQAINSKMFEVD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE5 MKITAVHLRRKELHQLLPHHVLQDKKAHSTEGRRLTDLNDSSFDLSAGCENSMSVPSSTS
:::.:.:..::.::::::.:::: :: ::::: .:: :::::.::: .::::::: ::
CCDS99 MKIAAMHVKRKQLHQLLPNHVLQKKKKHSTEGVKLTALNDSSLDLSMDSDNSMSVPSPTS
490 500 510 520 530 540
550 560 570 580 590
pF1KE5 TMKTGPLISS--SQGRNSPALAVMTASVANIQATEFSLQQVNTNESSGVALNESIPHAVS
. ::.:: :: :::::::: :: .:::.:::::: :. :::..:::: . .::::....
CCDS99 ATKTSPLNSSGSSQGRNSPAPAVTAASVTNIQATEVSVPQVNSSESSGGTSSESIPQTAT
550 560 570 580 590 600
600 610 620 630
pF1KE5 QPAISPSPKAMVARVVSSTCLISHPDLQETQQQTYLIL
:::::: :: :.:::::: :.. :
CCDS99 QPAISPPPKPTVSRVVSSTRLVNPPPRSSGNAATSGNAATKIPTPIVGVKRTSSPHKEES
610 620 630 640 650 660
>>CCDS1863.1 PAPOLG gene_id:64895|Hs108|chr2 (736 aa)
initn: 2502 init1: 2502 opt: 2539 Z-score: 2714.6 bits: 512.7 E(32554): 6.9e-145
Smith-Waterman score: 2539; 63.6% identity (83.1% similar) in 615 aa overlap (20-626:19-626)
10 20 30 40 50 60
pF1KE5 MPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQR
::..:::::: ::: : . ::.::....::::::.::::..
CCDS18 MKEMSANTVLDSQRQQKHYGITSPISLASPKEIDHIYTQKLIDAMKPFGVFEDEEELNH
10 20 30 40 50
70 80 90 100 110 120
pF1KE5 RILVLDKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
:..:: :::::::::: ..::::.:: ::. .::::::::::::::::::::::::::::
CCDS18 RLVVLGKLNNLVKEWISDVSESKNLPPSVVATVGGKIFTFGSYRLGVHTKGADIDALCVA
60 70 80 90 100 110
130 140 150 160 170 180
pF1KE5 PSHVDRSDFFTSFYAKLKLQEEVKDLRAVQEAFVPVIKLCFDGIEIDILFARLALQTIPE
: ::.::::: ::. ::: :. ...::::..:::::::. :::::::..:::::.::: .
CCDS18 PRHVERSDFFQSFFEKLKHQDGIRNLRAVEDAFVPVIKFEFDGIEIDLVFARLAIQTISD
120 130 140 150 160 170
190 200 210 220 230 240
pF1KE5 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNI
.::::::: :..:::::::::::::::::::::::: ..:::::::.::::: ..::::.
CCDS18 NLDLRDDSRLRSLDIRCIRSLNGCRVTDEILHLVPNKETFRLTLRAVKLWAKRRGIYSNM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KE5 LGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVW
:::::::::::::::::::::::.:::::.:::::::.::::::::::.::: :::::::
CCDS18 LGFLGGVSWAMLVARTCQLYPNAAASTLVHKFFLVFSKWEWPNPVLLKQPEESNLNLPVW
240 250 260 270 280 290
310 320 330 340 350 360
pF1KE5 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSK
:::::::::::::::::::::::::::::: ::: ::.::::::::.: ::: .:..:::
CCDS18 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSTSTRTVMVEEFKQGLAVTDEILQGKSDWSK
300 310 320 330 340 350
370 380 390 400 410 420
pF1KE5 LFEAPSFFQKYKHYIVLLASASTEKQHLEWVGLVESKIRILVGSLEKNEFITLAHVNPQS
:.: :.:::::.::::: ::::::..:::::::::::::.:::.::.:::::::::::::
CCDS18 LLEPPNFFQKYRHYIVLTASASTEENHLEWVGLVESKIRVLVGNLERNEFITLAHVNPQS
360 370 380 390 400 410
430 440 450 460 470 480
pF1KE5 FPAPKENPDMEEFRTMWVIGLGLKKPDNSEILSIDLTYDIQSFTDTVYRQAVNSKMFEMG
::. ::. ... .:: .:. ... .:.: ..:::::::::::::::::: : .:.. :
CCDS18 FPGNKEHHKDNNYVSMWFLGIIFRRVENAESVNIDLTYDIQSFTDTVYRQANNINMLKEG
420 430 440 450 460 470
490 500 510 520 530
pF1KE5 MKITAVHLRRKELHQLLPHHVLQDKKAHSTEGRRLTDLNDSSFDLSAG--CENSMSVPSS
::: :.:...:.::. :: ..:: :: .: :.:.: :: :.. .: . ::
CCDS18 MKIEATHVKKKQLHHYLPAEILQKKKKQS-----LSDVNRSSGGLQSKRLSLDSSCLDSS
480 490 500 510 520 530
540 550 560 570 580 590
pF1KE5 TSTMKTGPLISSSQGRNSPALAVMTASVANIQATEFSLQQVNTNESSGVALN------ES
.: . :. : .. .::... . :. :. . . ... ..:... .:
CCDS18 RDTDNGTPFNSPASKSDSPSVGETERNSAE-PAAVIVEKPLSVPPAQGLSIPVIGAKVDS
540 550 560 570 580 590
600 610 620 630
pF1KE5 IPHAVSQPAISPSPKAMVARVVSSTCLISHPDLQETQQQTYLIL
..:: :.. : ..:.: : : :
CCDS18 TVKTVSPPTVCTIP-TVVGRNVIPRITTPHNPAQGQPHLNGMSNITKTVTPKRSHSPSID
600 610 620 630 640 650
CCDS18 GTPKRLKDVEKFIRLESTFKDPRTAEERKRKSVDAIGGESMPIPTIDTSRKKRLPSKELP
660 670 680 690 700 710
>>CCDS58334.1 PAPOLA gene_id:10914|Hs108|chr14 (285 aa)
initn: 1711 init1: 1711 opt: 1711 Z-score: 1835.0 bits: 348.6 E(32554): 6.9e-96
Smith-Waterman score: 1711; 91.8% identity (96.8% similar) in 279 aa overlap (1-279:1-279)
10 20 30 40 50 60
pF1KE5 MPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQR
::::::::: : :: ..::..::::::.::::::.:::.:::::.:::::::::::::
CCDS58 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RILVLDKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
:::.: :::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS58 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PSHVDRSDFFTSFYAKLKLQEEVKDLRAVQEAFVPVIKLCFDGIEIDILFARLALQTIPE
: :::::::::::: ::::::::::::::.::::::::::::::::::::::::::::::
CCDS58 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE5 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKCHNIYSNI
:::::::::::::::::::::::::::::::::::::::::::::::::::: :::::::
CCDS58 DLDLRDDSLLKNLDIRCIRSLNGCRVTDEILHLVPNIDNFRLTLRAIKLWAKRHNIYSNI
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE5 LGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLPVW
:::::::::::::::::::::::.:::::.:::::::.:
CCDS58 LGFLGGVSWAMLVARTCQLYPNAIASTLVHKFFLVFSKWYVFRLY
250 260 270 280
310 320 330 340 350 360
pF1KE5 DPRVNPSDRYHLMPIITPAYPQQNSTYNVSISTRMVMIEEFKQGLAITHEILLSKAEWSK
>>CCDS58335.1 PAPOLA gene_id:10914|Hs108|chr14 (238 aa)
initn: 1227 init1: 1227 opt: 1234 Z-score: 1325.7 bits: 254.1 E(32554): 1.6e-67
Smith-Waterman score: 1234; 81.9% identity (91.4% similar) in 232 aa overlap (1-230:1-231)
10 20 30 40 50 60
pF1KE5 MPFPVTTQGPPQPAPPPNRYGVSSPISLAVPKETDCLLTQRLIETLRPFGVFEEEEELQR
::::::::: : :: ..::..::::::.::::::.:::.:::::.:::::::::::::
CCDS58 MPFPVTTQGSQQTQPPQKHYGITSPISLAAPKETDCVLTQKLIETLKPFGVFEEEEELQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE5 RILVLDKLNNLVKEWIREISESKSLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
:::.: :::::::::::::::::.::::::::::::::::::::::::::::::::::::
CCDS58 RILILGKLNNLVKEWIREISESKNLPQSVIENVGGKIFTFGSYRLGVHTKGADIDALCVA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE5 PSHVDRSDFFTSFYAKLKLQEEVKDLRAVQEAFVPVIKLCFDGIEIDILFARLALQTIPE
: :::::::::::: ::::::::::::::.::::::::::::::::::::::::::::::
CCDS58 PRHVDRSDFFTSFYDKLKLQEEVKDLRAVEEAFVPVIKLCFDGIEIDILFARLALQTIPE
130 140 150 160 170 180
190 200 210 220 230
pF1KE5 DLDLRDDSLLKNLDIRCIRSLNGCRVTDE--ILHLVPNIDNFRLTLRAIKLWAKCHNIYS
::::::::::::::::::::::: : .:... .:. : .. ..::.
CCDS58 DLDLRDDSLLKNLDIRCIRSLNGMRKPTSFCVLQFLSDISCFYTSF-VLKLFIAILLTQ
190 200 210 220 230
240 250 260 270 280 290
pF1KE5 NILGFLGGVSWAMLVARTCQLYPNAVASTLVRKFFLVFSEWEWPNPVLLKEPEERNLNLP
636 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 04:02:50 2016 done: Tue Nov 8 04:02:50 2016
Total Scan time: 3.850 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]