FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4587, 893 aa
  1>>>pF1KE4587 893 - 893 aa - 893 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0399+/-0.0011; mu= 13.2939+/- 0.066
 mean_var=118.3543+/-23.059, 0's: 0 Z-trim(107.0): 38  B-trim: 5 in 1/49
 Lambda= 0.117891
 statistics sampled from 9306 (9327) to 9306 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.643), E-opt: 0.2 (0.287), width:  16
 Scan time:  4.250

The best scores are:                                      opt bits E(32554)
CCDS10656.1 MVP gene_id:9961|Hs108|chr16           ( 893) 5814 1000.7       0


>>CCDS10656.1 MVP gene_id:9961|Hs108|chr16                (893 aa)
 initn: 5814 init1: 5814 opt: 5814  Z-score: 5347.8  bits: 1000.7 E(32554):    0
Smith-Waterman score: 5814; 100.0% identity (100.0% similar) in 893 aa overlap (1-893:1-893)

               10        20        30        40        50        60
pF1KE4 MATEEFIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MATEEFIIRIPPYHYIHVLDQNSNVSRVEVGPKTYIRQDNERVLFAPMRMVTVPPRHYCT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 VANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VANPVSRDAQGLVLFDVTGQVRLRHADLEIRLAQDPFPLYPGEVLEKDITPLQVVLPNTA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LHLKALLDFEDKDGDKVVAGDEWLFEGPGTYIPRKEVEVVEIIQATIIRQNQALRLRARK
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ECWDRDGKERVTGEEWLVTTVGAYLPAVFEEVLDLVDAVILTEKTALHLRARRNFRDFRG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSRRTGEEWLVTVQDTEAHVPDVHEEVLGVVPITTLGPHNYCVILDPVGPDGKNQLGQKR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 VVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VVKGEKSFFLQPGEQLEQGIQDVYVLSEQQGLLLRALQPLEEGEDEEKVSHQAGDHWLIR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 GPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GPLEYVPSAKVEVVEERQAIPLDENEGIYVQDVKTGKVRAVIGSTYMLTQDEVLWEKELP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 PGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 PGVEELLNKGQDPLADRGEKDTAKSLQPLAPRNKTRVVSYRVPHNAAVQVYDYREKRARV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 VFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VFGPELVSLGPEEQFTVLSLSAGRPKRPHARRALCLLLGPDFFTDVITIETADHARLQLQ
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 LAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LAYNWHFEVNDRKDPQETAKLFSVPDFVGDACKAIASRVRGAVASVTFDDFHKNSARIIR
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 TAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TAVFGFETSEAKGPDGMALPRPRDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQL
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE4 AIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEALSMAVESTG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 AIEITTNSQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEALSMAVESTG
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KE4 TAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 TAKAEAESRAEAARIEGEGSVLQAKLKAQALAIETEAELQRVQKVRELELVYARAQLELE
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KE4 VSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPIN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 VSKAQQLAEVEVKKFKQMTEAIGPSTIRDLAVAGPEMQVKLLQSLGLKSTLITDGSTPIN
              790       800       810       820       830       840

              850       860       870       880       890   
pF1KE4 LFNTAFGLLGMGPEGQPLGRRVASGPSPGEGISPQSAQAPQAPGDNHVVPVLR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 LFNTAFGLLGMGPEGQPLGRRVASGPSPGEGISPQSAQAPQAPGDNHVVPVLR
              850       860       870       880       890   




893 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:45:16 2016 done: Sat Nov  5 23:45:17 2016
 Total Scan time:  4.250 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]