Result of FASTA (omim) for
pFN21AE4583
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4583, 840 aa
1>>>pF1KE4583 840 - 840 aa - 840 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6804+/-0.00049; mu= 18.0250+/- 0.030
mean_var=71.2118+/-14.624, 0's: 0 Z-trim(109.1): 83 B-trim: 73 in 1/49
Lambda= 0.151984
statistics sampled from 17203 (17286) to 17203 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.552), E-opt: 0.2 (0.203), width: 16
Scan time: 8.730
The best scores are: opt bits E(85289)
NP_001494 (OMIM: 602515) phosphatidylinositol-glyc ( 840) 5685 1256.8 0
XP_016866242 (OMIM: 602515) PREDICTED: phosphatidy ( 850) 5660 1251.3 0
XP_016866243 (OMIM: 602515) PREDICTED: phosphatidy ( 677) 4398 974.5 0
XP_011512811 (OMIM: 602515) PREDICTED: phosphatidy ( 518) 3456 767.9 0
NP_002195 (OMIM: 605025,614748) integrin alpha-3 p (1051) 237 62.2 1.4e-08
XP_011544151 (OMIM: 153370) PREDICTED: integrin al (1074) 237 62.2 1.4e-08
NP_001107852 (OMIM: 153370) integrin alpha-L isofo (1086) 237 62.2 1.4e-08
XP_006721107 (OMIM: 153370) PREDICTED: integrin al (1087) 237 62.2 1.4e-08
XP_005255370 (OMIM: 153370) PREDICTED: integrin al (1169) 237 62.3 1.5e-08
NP_002200 (OMIM: 153370) integrin alpha-L isoform (1170) 237 62.3 1.5e-08
XP_005268907 (OMIM: 600536,613204) PREDICTED: inte ( 979) 225 59.6 8.1e-08
XP_005268905 (OMIM: 600536,613204) PREDICTED: inte (1023) 225 59.6 8.4e-08
XP_005268906 (OMIM: 600536,613204) PREDICTED: inte (1023) 225 59.6 8.4e-08
XP_005268903 (OMIM: 600536,613204) PREDICTED: inte (1024) 225 59.6 8.4e-08
NP_001138469 (OMIM: 600536,613204) integrin alpha- (1044) 225 59.6 8.5e-08
XP_016874754 (OMIM: 600536,613204) PREDICTED: inte (1051) 225 59.6 8.6e-08
XP_005268901 (OMIM: 600536,613204) PREDICTED: inte (1068) 225 59.6 8.7e-08
XP_005268899 (OMIM: 600536,613204) PREDICTED: inte (1131) 225 59.6 9.2e-08
NP_002197 (OMIM: 600536,613204) integrin alpha-7 i (1137) 225 59.6 9.2e-08
NP_001138468 (OMIM: 600536,613204) integrin alpha- (1141) 225 59.6 9.2e-08
XP_005268898 (OMIM: 600536,613204) PREDICTED: inte (1162) 225 59.6 9.4e-08
XP_005268897 (OMIM: 600536,613204) PREDICTED: inte (1175) 225 59.6 9.5e-08
XP_005268896 (OMIM: 600536,613204) PREDICTED: inte (1181) 225 59.6 9.5e-08
XP_011523052 (OMIM: 187800,273800,607759) PREDICTE (1000) 219 58.3 2e-07
XP_011523051 (OMIM: 187800,273800,607759) PREDICTE (1005) 219 58.3 2.1e-07
NP_000410 (OMIM: 187800,273800,607759) integrin al (1039) 219 58.3 2.1e-07
XP_006721108 (OMIM: 120980,609939) PREDICTED: inte ( 613) 203 54.7 1.5e-06
NP_000623 (OMIM: 120980,609939) integrin alpha-M i (1152) 203 54.8 2.6e-06
XP_016878705 (OMIM: 120980,609939) PREDICTED: inte ( 917) 198 53.7 4.6e-06
XP_011544152 (OMIM: 120980,609939) PREDICTED: inte (1091) 198 53.7 5.4e-06
NP_001139280 (OMIM: 120980,609939) integrin alpha- (1153) 198 53.7 5.6e-06
NP_001138471 (OMIM: 193210) integrin alpha-V isofo (1002) 178 49.3 0.0001
NP_001138472 (OMIM: 193210) integrin alpha-V isofo (1012) 178 49.3 0.00011
NP_002201 (OMIM: 193210) integrin alpha-V isoform (1048) 178 49.3 0.00011
XP_016859497 (OMIM: 147556,226730) PREDICTED: inte ( 944) 174 48.4 0.00018
NP_001303235 (OMIM: 147556,226730) integrin alpha- ( 954) 174 48.4 0.00018
XP_016859496 (OMIM: 147556,226730) PREDICTED: inte ( 959) 174 48.4 0.00018
XP_016859495 (OMIM: 147556,226730) PREDICTED: inte ( 962) 174 48.4 0.00019
XP_016859494 (OMIM: 147556,226730) PREDICTED: inte ( 977) 174 48.4 0.00019
XP_006712574 (OMIM: 147556,226730) PREDICTED: inte (1058) 174 48.4 0.0002
NP_000201 (OMIM: 147556,226730) integrin alpha-6 i (1073) 174 48.4 0.0002
XP_006712573 (OMIM: 147556,226730) PREDICTED: inte (1076) 174 48.4 0.0002
NP_001073286 (OMIM: 147556,226730) integrin alpha- (1091) 174 48.4 0.00021
NP_002198 (OMIM: 603963) integrin alpha-9 precurso (1035) 172 48.0 0.00027
NP_000876 (OMIM: 192975) integrin alpha-4 isoform (1032) 170 47.5 0.00036
XP_016880076 (OMIM: 604682) PREDICTED: integrin al ( 848) 163 46.0 0.00088
XP_005254285 (OMIM: 604789) PREDICTED: integrin al (1086) 164 46.2 0.00094
XP_011519665 (OMIM: 604789) PREDICTED: integrin al (1119) 164 46.2 0.00096
NP_001004439 (OMIM: 604789) integrin alpha-11 prec (1188) 164 46.3 0.001
NP_001278423 (OMIM: 191830,604063) integrin alpha- (1048) 163 46.0 0.0011
>>NP_001494 (OMIM: 602515) phosphatidylinositol-glycan-s (840 aa)
initn: 5685 init1: 5685 opt: 5685 Z-score: 6732.6 bits: 1256.8 E(85289): 0
Smith-Waterman score: 5685; 100.0% identity (100.0% similar) in 840 aa overlap (1-840:1-840)
10 20 30 40 50 60
pF1KE4 MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYRELLLEHQDAY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEKDTEKLVAFLF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQFEFNFNYLAR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQFEFNFNYLAR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 RWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYPTYSTKSPFLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYPTYSTKSPFLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 EQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQQNHTQGSKMQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQQNHTQGSKMQ
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 KNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNIRTMFIGGSQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNIRTMFIGGSQL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 SQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGHIHIGRVYLIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGHIHIGRVYLIY
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 GNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVGAPSVGSEQLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVGAPSVGSEQLT
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 YKGAVYVYFGSKQGGMSSSPNITISCQDIYCNLGWTLLAADVNGDSEPDLVIGSPFAPGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKGAVYVYFGSKQGGMSSSPNITISCQDIYCNLGWTLLAADVNGDSEPDLVIGSPFAPGG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 GKQKGIVAAFYSGPSLSDKEKLNVEAANWTVRGEEDFSWFGYSLHGVTVDNRTLLLVGSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GKQKGIVAAFYSGPSLSDKEKLNVEAANWTVRGEEDFSWFGYSLHGVTVDNRTLLLVGSP
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 TWKNASRLGHLLHIRDEKKSLGRVYGYFPPNGQSWFTISGDKAMGKLGTSLSSGHVLMNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TWKNASRLGHLLHIRDEKKSLGRVYGYFPPNGQSWFTISGDKAMGKLGTSLSSGHVLMNG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 TLKQVLLVGAPTYDDVSKVAFLTVTLHQGGATRMYALTSDAQPLLLSTFSGDRRFSRFGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TLKQVLLVGAPTYDDVSKVAFLTVTLHQGGATRMYALTSDAQPLLLSTFSGDRRFSRFGG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KE4 VLHLSDLDDDGLDEIIMAAPLRIADVTSGLIGGEDGRVYVYNGKETTLGDMTGKCKSWIT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VLHLSDLDDDGLDEIIMAAPLRIADVTSGLIGGEDGRVYVYNGKETTLGDMTGKCKSWIT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KE4 PCPEEKAQYVLISPEASSRFGSSLITVRSKAKNQVVIAAGRSSLGARLSGALHVYSLGSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PCPEEKAQYVLISPEASSRFGSSLITVRSKAKNQVVIAAGRSSLGARLSGALHVYSLGSD
790 800 810 820 830 840
>>XP_016866242 (OMIM: 602515) PREDICTED: phosphatidylino (850 aa)
initn: 5660 init1: 5660 opt: 5660 Z-score: 6702.9 bits: 1251.3 E(85289): 0
Smith-Waterman score: 5660; 100.0% identity (100.0% similar) in 836 aa overlap (5-840:15-850)
10 20 30 40 50
pF1KE4 MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYR
::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MQVAMARATTATGNRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 ELLLEHQDAYQAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ELLLEHQDAYQAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 DTEKLVAFLFGITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DTEKLVAFLFGITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FEFNFNYLARRWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FEFNFNYLARRWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 TYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE4 QNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE4 RTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGH
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE4 IHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE4 APSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNLGWTLLAADVNGDSEPDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 APSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNLGWTLLAADVNGDSEPDL
490 500 510 520 530 540
540 550 560 570 580 590
pF1KE4 VIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANWTVRGEEDFSWFGYSLHGVTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANWTVRGEEDFSWFGYSLHGVTVD
550 560 570 580 590 600
600 610 620 630 640 650
pF1KE4 NRTLLLVGSPTWKNASRLGHLLHIRDEKKSLGRVYGYFPPNGQSWFTISGDKAMGKLGTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NRTLLLVGSPTWKNASRLGHLLHIRDEKKSLGRVYGYFPPNGQSWFTISGDKAMGKLGTS
610 620 630 640 650 660
660 670 680 690 700 710
pF1KE4 LSSGHVLMNGTLKQVLLVGAPTYDDVSKVAFLTVTLHQGGATRMYALTSDAQPLLLSTFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSSGHVLMNGTLKQVLLVGAPTYDDVSKVAFLTVTLHQGGATRMYALTSDAQPLLLSTFS
670 680 690 700 710 720
720 730 740 750 760 770
pF1KE4 GDRRFSRFGGVLHLSDLDDDGLDEIIMAAPLRIADVTSGLIGGEDGRVYVYNGKETTLGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDRRFSRFGGVLHLSDLDDDGLDEIIMAAPLRIADVTSGLIGGEDGRVYVYNGKETTLGD
730 740 750 760 770 780
780 790 800 810 820 830
pF1KE4 MTGKCKSWITPCPEEKAQYVLISPEASSRFGSSLITVRSKAKNQVVIAAGRSSLGARLSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MTGKCKSWITPCPEEKAQYVLISPEASSRFGSSLITVRSKAKNQVVIAAGRSSLGARLSG
790 800 810 820 830 840
840
pF1KE4 ALHVYSLGSD
::::::::::
XP_016 ALHVYSLGSD
850
>>XP_016866243 (OMIM: 602515) PREDICTED: phosphatidylino (677 aa)
initn: 4397 init1: 4397 opt: 4398 Z-score: 5208.9 bits: 974.5 E(85289): 0
Smith-Waterman score: 4398; 99.7% identity (99.7% similar) in 661 aa overlap (182-840:17-677)
160 170 180 190 200
pF1KE4 GSYSEAHSAGDFGGDVLSQFEFNFNYLARRW--YVPVKDLLGIYEKLYGRKVITENVIVD
: :::::::::::::::::::::::::::
XP_016 MSAGIVWALNKDSLGPWELYVPVKDLLGIYEKLYGRKVITENVIVD
10 20 30 40
210 220 230 240 250 260
pF1KE4 CSHIQFLEMYGEMLAVSKLYPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CSHIQFLEMYGEMLAVSKLYPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFML
50 60 70 80 90 100
270 280 290 300 310 320
pF1KE4 ENGTSDCNLPENPLFIACGGQQNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENGTSDCNLPENPLFIACGGQQNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFF
110 120 130 140 150 160
330 340 350 360 370 380
pF1KE4 SVNSWTPDSMSFIYKALERNIRTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSAD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SVNSWTPDSMSFIYKALERNIRTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSAD
170 180 190 200 210 220
390 400 410 420 430 440
pF1KE4 LNQDGHGDLVVGAPGYSRPGHIHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LNQDGHGDLVVGAPGYSRPGHIHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGR
230 240 250 260 270 280
450 460 470 480 490 500
pF1KE4 FGSALAVLDFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FGSALAVLDFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDI
290 300 310 320 330 340
510 520 530 540 550 560
pF1KE4 YCNLGWTLLAADVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YCNLGWTLLAADVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANW
350 360 370 380 390 400
570 580 590 600 610 620
pF1KE4 TVRGEEDFSWFGYSLHGVTVDNRTLLLVGSPTWKNASRLGHLLHIRDEKKSLGRVYGYFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TVRGEEDFSWFGYSLHGVTVDNRTLLLVGSPTWKNASRLGHLLHIRDEKKSLGRVYGYFP
410 420 430 440 450 460
630 640 650 660 670 680
pF1KE4 PNGQSWFTISGDKAMGKLGTSLSSGHVLMNGTLKQVLLVGAPTYDDVSKVAFLTVTLHQG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PNGQSWFTISGDKAMGKLGTSLSSGHVLMNGTLKQVLLVGAPTYDDVSKVAFLTVTLHQG
470 480 490 500 510 520
690 700 710 720 730 740
pF1KE4 GATRMYALTSDAQPLLLSTFSGDRRFSRFGGVLHLSDLDDDGLDEIIMAAPLRIADVTSG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GATRMYALTSDAQPLLLSTFSGDRRFSRFGGVLHLSDLDDDGLDEIIMAAPLRIADVTSG
530 540 550 560 570 580
750 760 770 780 790 800
pF1KE4 LIGGEDGRVYVYNGKETTLGDMTGKCKSWITPCPEEKAQYVLISPEASSRFGSSLITVRS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIGGEDGRVYVYNGKETTLGDMTGKCKSWITPCPEEKAQYVLISPEASSRFGSSLITVRS
590 600 610 620 630 640
810 820 830 840
pF1KE4 KAKNQVVIAAGRSSLGARLSGALHVYSLGSD
:::::::::::::::::::::::::::::::
XP_016 KAKNQVVIAAGRSSLGARLSGALHVYSLGSD
650 660 670
>>XP_011512811 (OMIM: 602515) PREDICTED: phosphatidylino (518 aa)
initn: 3456 init1: 3456 opt: 3456 Z-score: 4094.4 bits: 767.9 E(85289): 0
Smith-Waterman score: 3456; 100.0% identity (100.0% similar) in 503 aa overlap (5-507:15-517)
10 20 30 40 50
pF1KE4 MSAFRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYR
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MQVAMARATTATGNRLWPGLLIMLGSLCHRGSPCGLSTHVEIGHRALEFLQLHNGRVNYR
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 ELLLEHQDAYQAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ELLLEHQDAYQAGIVFPDCFYPSICKGGKFHDVSESTHWTPFLNASVHYIRENYPLPWEK
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 DTEKLVAFLFGITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DTEKLVAFLFGITSHMAADVSWHSLGLEQGFLRTMGAIDFHGSYSEAHSAGDFGGDVLSQ
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FEFNFNYLARRWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FEFNFNYLARRWYVPVKDLLGIYEKLYGRKVITENVIVDCSHIQFLEMYGEMLAVSKLYP
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 TYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIACGGQ
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE4 QNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSMSFIYKALERNI
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE4 RTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RTMFIGGSQLSQKHVSSPLASYFLSFPYARLGWAMTSADLNQDGHGDLVVGAPGYSRPGH
370 380 390 400 410 420
420 430 440 450 460 470
pF1KE4 IHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSALAVLDFNVDGVPDLAVG
430 440 450 460 470 480
480 490 500 510 520 530
pF1KE4 APSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNLGWTLLAADVNGDSEPDL
:::::::::::::::::::::::::::::::::::::
XP_011 APSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQM
490 500 510
540 550 560 570 580 590
pF1KE4 VIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANWTVRGEEDFSWFGYSLHGVTVD
>>NP_002195 (OMIM: 605025,614748) integrin alpha-3 prepr (1051 aa)
initn: 178 init1: 177 opt: 237 Z-score: 275.1 bits: 62.2 E(85289): 1.4e-08
Smith-Waterman score: 244; 28.7% identity (58.1% similar) in 296 aa overlap (258-534:186-452)
230 240 250 260 270 280
pF1KE4 LYPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTSDCNLPENPLFIAC
..: .: . : . ::: .. .: ....
NP_002 RRMVGKCYVRGNDLELDSSDDWQTYHNEMCNSNTDYLETGMCQLGTSG-GFTQNTVYFGA
160 170 180 190 200 210
290 300 310 320 330 340
pF1KE4 GGQQNHTQGSKM-QKNDFHRNLTT-SLTESVDRNINYTERGVFFSVNSWT--PDSMSFIY
: : .: : :.... .:. : . :.. : : ..:.:. : .....
NP_002 PGAYNWKGNSYMIQRKEW--DLSEYSYKDPEDQGNLYI--GYTMQVGSFILHPKNITIVT
220 230 240 250 260 270
350 360 370 380 390
pF1KE4 KA-LERNIRTMFI----GGSQLSQKHV--SSPLASYFLSFPYARLGWAMTSADLNQDGHG
: .:.. ..:. .:..: ...: .: ...:: : :.. ::::.::
NP_002 GAPRHRHMGAVFLLSQEAGGDLRRRQVLEGSQVGAYF--------GSAIALADLNNDGWQ
280 290 300 310 320
400 410 420 430 440 450
pF1KE4 DLVVGAPGYSRPGHIHIGRVYLIYGNDLGLP-PVDLDLDKEAHRILEGFQPSGR-FGSAL
::.:::: : . . ..: . .. :. : :. .: .:.: ::: :: ..
NP_002 DLLVGAPYYFERKE-EVGGAIYVFMNQAGTSFPAHPSL------LLHG--PSGSAFGLSV
330 340 350 360 370
460 470 480 490 500
pF1KE4 AVL-DFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDI----
: . :.: :: :.::::: : : ::.: .:..: . .:. .: . .
NP_002 ASIGDINQDGFQDIAVGAPFEG------LGKVYIYHSSSKG-LLRQPQQVIHGEKLGLPG
380 390 400 410 420
510 520 530 540 550 560
pF1KE4 YCNLGWTLLAA-DVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAAN
..:..: . ::. . :::..::
NP_002 LATFGYSLSGQMDVDENFYPDLLVGSLSDHIVLLRARPVINIVHKTLVPRPAVLDPALCT
430 440 450 460 470 480
>>XP_011544151 (OMIM: 153370) PREDICTED: integrin alpha- (1074 aa)
initn: 118 init1: 72 opt: 237 Z-score: 275.0 bits: 62.2 E(85289): 1.4e-08
Smith-Waterman score: 247; 27.1% identity (56.9% similar) in 295 aa overlap (259-534:241-507)
230 240 250 260 270 280
pF1KE4 YPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTS--DCNLPENPLFIA
:. :::: .: ..: . .: .. ..
XP_011 ASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVG
220 230 240 250 260 270
290 300 310 320 330 340
pF1KE4 CGGQQNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSM--SFIYK
: .. . : : :.. . : .: . .. : ..: .: :. . :.. .
XP_011 AVGAKDWAGGFLDLKADLQDD-TFIGNEPLTPEVRAGYLG--YTV-TWLPSRQKTSLLAS
280 290 300 310 320
350 360 370 380 390
pF1KE4 ALERNI---RTMFI----GGSQLSQKHV--SSPLASYFLSFPYARLGWAMTSADLNQDGH
. : :.... ::.. :: .. .. ..::: : . ..:..:::.
XP_011 GAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYF--------GGELCGVDVDQDGE
330 340 350 360 370
400 410 420 430 440 450
pF1KE4 GDLV-VGAPGYSRPGHIHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSAL
.:. .::: . :. . :::.. .::. :. .:. . :. : :::: :.
XP_011 TELLLIGAPLFY--GEQRGGRVFIYQRRQLGFEEVS-ELQGDP-----GY-PLGRFGEAI
380 390 400 410 420
460 470 480 490 500 510
pF1KE4 AVL-DFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNL
..: :.: ::. :.::::: : .::::.. : ..::.: .:. : .. ..
XP_011 TALTDINGDGLVDVAVGAP------LEEQGAVYIFNG-RHGGLSPQPSQRIEGTQVLSGI
430 440 450 460 470 480
520 530 540 550 560
pF1KE4 GWTLLAA----DVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANW
: . :..::. :...:.
XP_011 QWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSY
490 500 510 520 530 540
>>NP_001107852 (OMIM: 153370) integrin alpha-L isoform b (1086 aa)
initn: 118 init1: 72 opt: 237 Z-score: 274.9 bits: 62.2 E(85289): 1.4e-08
Smith-Waterman score: 247; 27.1% identity (56.9% similar) in 295 aa overlap (259-534:254-520)
230 240 250 260 270 280
pF1KE4 YPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTS--DCNLPENPLFIA
:. :::: .: ..: . .: .. ..
NP_001 ASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVG
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE4 CGGQQNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSM--SFIYK
: .. . : : :.. . : .: . .. : ..: .: :. . :.. .
NP_001 AVGAKDWAGGFLDLKADLQDD-TFIGNEPLTPEVRAGYLG--YTV-TWLPSRQKTSLLAS
290 300 310 320 330
350 360 370 380 390
pF1KE4 ALERNI---RTMFI----GGSQLSQKHV--SSPLASYFLSFPYARLGWAMTSADLNQDGH
. : :.... ::.. :: .. .. ..::: : . ..:..:::.
NP_001 GAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYF--------GGELCGVDVDQDGE
340 350 360 370 380 390
400 410 420 430 440 450
pF1KE4 GDLV-VGAPGYSRPGHIHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSAL
.:. .::: . :. . :::.. .::. :. .:. . :. : :::: :.
NP_001 TELLLIGAPLFY--GEQRGGRVFIYQRRQLGFEEVS-ELQGDP-----GY-PLGRFGEAI
400 410 420 430 440
460 470 480 490 500 510
pF1KE4 AVL-DFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNL
..: :.: ::. :.::::: : .::::.. : ..::.: .:. : .. ..
NP_001 TALTDINGDGLVDVAVGAP------LEEQGAVYIFNG-RHGGLSPQPSQRIEGTQVLSGI
450 460 470 480 490
520 530 540 550 560
pF1KE4 GWTLLAA----DVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANW
: . :..::. :...:.
NP_001 QWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSY
500 510 520 530 540 550
>>XP_006721107 (OMIM: 153370) PREDICTED: integrin alpha- (1087 aa)
initn: 118 init1: 72 opt: 237 Z-score: 274.9 bits: 62.2 E(85289): 1.4e-08
Smith-Waterman score: 247; 27.1% identity (56.9% similar) in 295 aa overlap (259-534:254-520)
230 240 250 260 270 280
pF1KE4 YPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTS--DCNLPENPLFIA
:. :::: .: ..: . .: .. ..
XP_006 ASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVG
230 240 250 260 270 280
290 300 310 320 330 340
pF1KE4 CGGQQNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSM--SFIYK
: .. . : : :.. . : .: . .. : ..: .: :. . :.. .
XP_006 AVGAKDWAGGFLDLKADLQDD-TFIGNEPLTPEVRAGYLG--YTV-TWLPSRQKTSLLAS
290 300 310 320 330
350 360 370 380 390
pF1KE4 ALERNI---RTMFI----GGSQLSQKHV--SSPLASYFLSFPYARLGWAMTSADLNQDGH
. : :.... ::.. :: .. .. ..::: : . ..:..:::.
XP_006 GAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYF--------GGELCGVDVDQDGE
340 350 360 370 380 390
400 410 420 430 440 450
pF1KE4 GDLV-VGAPGYSRPGHIHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSAL
.:. .::: . :. . :::.. .::. :. .:. . :. : :::: :.
XP_006 TELLLIGAPLFY--GEQRGGRVFIYQRRQLGFEEVS-ELQGDP-----GY-PLGRFGEAI
400 410 420 430 440
460 470 480 490 500 510
pF1KE4 AVL-DFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNL
..: :.: ::. :.::::: : .::::.. : ..::.: .:. : .. ..
XP_006 TALTDINGDGLVDVAVGAP------LEEQGAVYIFNG-RHGGLSPQPSQRIEGTQVLSGI
450 460 470 480 490
520 530 540 550 560
pF1KE4 GWTLLAA----DVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANW
: . :..::. :...:.
XP_006 QWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSY
500 510 520 530 540 550
>>XP_005255370 (OMIM: 153370) PREDICTED: integrin alpha- (1169 aa)
initn: 118 init1: 72 opt: 237 Z-score: 274.4 bits: 62.3 E(85289): 1.5e-08
Smith-Waterman score: 247; 27.1% identity (56.9% similar) in 295 aa overlap (259-534:337-603)
230 240 250 260 270 280
pF1KE4 YPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTS--DCNLPENPLFIA
:. :::: .: ..: . .: .. ..
XP_005 ASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVG
310 320 330 340 350 360
290 300 310 320 330 340
pF1KE4 CGGQQNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSM--SFIYK
: .. . : : :.. . : .: . .. : ..: .: :. . :.. .
XP_005 AVGAKDWAGGFLDLKADLQDD-TFIGNEPLTPEVRAGYLG--YTV-TWLPSRQKTSLLAS
370 380 390 400 410 420
350 360 370 380 390
pF1KE4 ALERNI---RTMFI----GGSQLSQKHV--SSPLASYFLSFPYARLGWAMTSADLNQDGH
. : :.... ::.. :: .. .. ..::: : . ..:..:::.
XP_005 GAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYF--------GGELCGVDVDQDGE
430 440 450 460 470
400 410 420 430 440 450
pF1KE4 GDLV-VGAPGYSRPGHIHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSAL
.:. .::: . :. . :::.. .::. :. .:. . :. : :::: :.
XP_005 TELLLIGAPLFY--GEQRGGRVFIYQRRQLGFEEVS-ELQGDP-----GY-PLGRFGEAI
480 490 500 510 520
460 470 480 490 500 510
pF1KE4 AVL-DFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNL
..: :.: ::. :.::::: : .::::.. : ..::.: .:. : .. ..
XP_005 TALTDINGDGLVDVAVGAP------LEEQGAVYIFNG-RHGGLSPQPSQRIEGTQVLSGI
530 540 550 560 570
520 530 540 550 560
pF1KE4 GWTLLAA----DVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANW
: . :..::. :...:.
XP_005 QWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSY
580 590 600 610 620 630
>>NP_002200 (OMIM: 153370) integrin alpha-L isoform a pr (1170 aa)
initn: 118 init1: 72 opt: 237 Z-score: 274.4 bits: 62.3 E(85289): 1.5e-08
Smith-Waterman score: 247; 27.1% identity (56.9% similar) in 295 aa overlap (259-534:337-603)
230 240 250 260 270 280
pF1KE4 YPTYSTKSPFLVEQFQEYFLGGLDDMAFWSTNIYHLTSFMLENGTS--DCNLPENPLFIA
:. :::: .: ..: . .: .. ..
NP_002 ASEFVKILDTFEKLKDLFTELQKKIYVIEGTSKQDLTSFNMELSSSGISADLSRGHAVVG
310 320 330 340 350 360
290 300 310 320 330 340
pF1KE4 CGGQQNHTQGSKMQKNDFHRNLTTSLTESVDRNINYTERGVFFSVNSWTPDSM--SFIYK
: .. . : : :.. . : .: . .. : ..: .: :. . :.. .
NP_002 AVGAKDWAGGFLDLKADLQDD-TFIGNEPLTPEVRAGYLG--YTV-TWLPSRQKTSLLAS
370 380 390 400 410 420
350 360 370 380 390
pF1KE4 ALERNI---RTMFI----GGSQLSQKHV--SSPLASYFLSFPYARLGWAMTSADLNQDGH
. : :.... ::.. :: .. .. ..::: : . ..:..:::.
NP_002 GAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYF--------GGELCGVDVDQDGE
430 440 450 460 470
400 410 420 430 440 450
pF1KE4 GDLV-VGAPGYSRPGHIHIGRVYLIYGNDLGLPPVDLDLDKEAHRILEGFQPSGRFGSAL
.:. .::: . :. . :::.. .::. :. .:. . :. : :::: :.
NP_002 TELLLIGAPLFY--GEQRGGRVFIYQRRQLGFEEVS-ELQGDP-----GY-PLGRFGEAI
480 490 500 510 520
460 470 480 490 500 510
pF1KE4 AVL-DFNVDGVPDLAVGAPSVGSEQLTYKGAVYVYFGSKQGGMSSSPNITISCQDIYCNL
..: :.: ::. :.::::: : .::::.. : ..::.: .:. : .. ..
NP_002 TALTDINGDGLVDVAVGAP------LEEQGAVYIFNG-RHGGLSPQPSQRIEGTQVLSGI
530 540 550 560 570
520 530 540 550 560
pF1KE4 GWTLLAA----DVNGDSEPDLVIGSPFAPGGGKQKGIVAAFYSGPSLSDKEKLNVEAANW
: . :..::. :...:.
NP_002 QWFGRSIHGVKDLEGDGLADVAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSY
580 590 600 610 620 630
840 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:46:42 2016 done: Sat Nov 5 23:46:44 2016
Total Scan time: 8.730 Total Display time: 0.120
Function used was FASTA [36.3.4 Apr, 2011]