Result of FASTA (omim) for
pFN21AE4568
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4568, 721 aa
1>>>pF1KE4568 721 - 721 aa - 721 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8049+/-0.000322; mu= 20.1214+/- 0.021
mean_var=112.1294+/-22.018, 0's: 0 Z-trim(118.1): 67 B-trim: 0 in 0/55
Lambda= 0.121120
statistics sampled from 30674 (30742) to 30674 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.702), E-opt: 0.2 (0.36), width: 16
Scan time: 11.370
The best scores are: opt bits E(85289)
NP_003898 (OMIM: 603896,603945) translation initia ( 721) 4776 845.7 0
XP_011511567 (OMIM: 603896,603945) PREDICTED: tran ( 471) 3090 550.9 4.3e-156
XP_011511568 (OMIM: 603896,603945) PREDICTED: tran ( 442) 2912 519.7 9.5e-147
>>NP_003898 (OMIM: 603896,603945) translation initiation (721 aa)
initn: 4776 init1: 4776 opt: 4776 Z-score: 4513.2 bits: 845.7 E(85289): 0
Smith-Waterman score: 4776; 99.9% identity (100.0% similar) in 721 aa overlap (1-721:1-721)
10 20 30 40 50 60
pF1KE4 MAAPVVAPPGVVVSRANKRSGAGPGGSGGGGARGAEEEPPPPLQAVLVADSFDRRFFPIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAAPVVAPPGVVVSRANKRSGAGPGGSGGGGARGAEEEPPPPLQAVLVADSFDRRFFPIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 KDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 RIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 MTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 RYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 RYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 SNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 LLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 ERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 KGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDS
490 500 510 520 530 540
550 560 570 580 590 600
pF1KE4 RGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNVSLKEVMQVLSHVV
::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
NP_003 RGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KE4 LEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KE4 ISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 ISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSED
670 680 690 700 710 720
pF1KE4 D
:
NP_003 D
>>XP_011511567 (OMIM: 603896,603945) PREDICTED: translat (471 aa)
initn: 3090 init1: 3090 opt: 3090 Z-score: 2923.3 bits: 550.9 E(85289): 4.3e-156
Smith-Waterman score: 3090; 99.8% identity (100.0% similar) in 467 aa overlap (255-721:5-471)
230 240 250 260 270 280
pF1KE4 AFPLSLFQGSSDGVEVRYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILG
::::::::::::::::::::::::::::::
XP_011 MLGLQVAQLFTDNFDYQTRDDFVRGLLVNEEILG
10 20 30
290 300 310 320 330 340
pF1KE4 NQIHMHVTAKEYGARVSNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NQIHMHVTAKEYGARVSNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYR
40 50 60 70 80 90
350 360 370 380 390 400
pF1KE4 GPEVSLGHGSILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPEVSLGHGSILEENVLLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAA
100 110 120 130 140 150
410 420 430 440 450 460
pF1KE4 GAQIHQSLLCDNAEVKERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GAQIHQSLLCDNAEVKERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGE
160 170 180 190 200 210
470 480 490 500 510 520
pF1KE4 FSDDSGADQEKDKVKMKGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FSDDSGADQEKDKVKMKGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEE
220 230 240 250 260 270
530 540 550 560 570 580
pF1KE4 SESESEQSMDSEEPDSRGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SESESEQSMDSEEPDSRGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYA
280 290 300 310 320 330
590 600 610 620 630 640
pF1KE4 YNVSLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLE
::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YNISLKEVMQVLSHVVLEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLE
340 350 360 370 380 390
650 660 670 680 690 700
pF1KE4 ALAAIEDFFLEHEALGISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ALAAIEDFFLEHEALGISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQ
400 410 420 430 440 450
710 720
pF1KE4 RFIQWLKEAEEESSEDD
:::::::::::::::::
XP_011 RFIQWLKEAEEESSEDD
460 470
>>XP_011511568 (OMIM: 603896,603945) PREDICTED: translat (442 aa)
initn: 2912 init1: 2912 opt: 2912 Z-score: 2755.6 bits: 519.7 E(85289): 9.5e-147
Smith-Waterman score: 2912; 99.8% identity (100.0% similar) in 440 aa overlap (282-721:3-442)
260 270 280 290 300 310
pF1KE4 CSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARVSNLHMYSAVCA
::::::::::::::::::::::::::::::
XP_011 MLILGNQIHMHVTAKEYGARVSNLHMYSAVCA
10 20 30
320 330 340 350 360 370
pF1KE4 DVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENVLLGSGTVIGSN
40 50 60 70 80 90
380 390 400 410 420 430
pF1KE4 CFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVKERVTLKPRSVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVKERVTLKPRSVL
100 110 120 130 140 150
440 450 460 470 480 490
pF1KE4 TSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKMKGYNPAEVGAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 TSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKMKGYNPAEVGAA
160 170 180 190 200 210
500 510 520 530 540 550
pF1KE4 GKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDSRGGSPQMDDIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDSRGGSPQMDDIK
220 230 240 250 260 270
560 570 580 590 600 610
pF1KE4 VFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNVSLKEVMQVLSHVVLEFPLQQMDSP
:::::::::::::::::::::::::::::::::::.::::::::::::::::::::::::
XP_011 VFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVVLEFPLQQMDSP
280 290 300 310 320 330
620 630 640 650 660 670
pF1KE4 LDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALGISMAKVLMAFY
340 350 360 370 380 390
680 690 700 710 720
pF1KE4 QLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSEDD
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSEDD
400 410 420 430 440
721 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 23:52:15 2016 done: Sat Nov 5 23:52:16 2016
Total Scan time: 11.370 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]