FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4568, 721 aa
  1>>>pF1KE4568 721 - 721 aa - 721 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4466+/-0.000798; mu= 16.2664+/- 0.049
 mean_var=111.2241+/-22.479, 0's: 0 Z-trim(110.7): 21  B-trim: 0 in 0/52
 Lambda= 0.121612
 statistics sampled from 11769 (11789) to 11769 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.706), E-opt: 0.2 (0.362), width:  16
 Scan time:  4.400

The best scores are:                                      opt bits E(32554)
CCDS3252.1 EIF2B5 gene_id:8893|Hs108|chr3          ( 721) 4776 848.9       0


>>CCDS3252.1 EIF2B5 gene_id:8893|Hs108|chr3               (721 aa)
 initn: 4776 init1: 4776 opt: 4776  Z-score: 4530.9  bits: 848.9 E(32554):    0
Smith-Waterman score: 4776; 99.9% identity (100.0% similar) in 721 aa overlap (1-721:1-721)

               10        20        30        40        50        60
pF1KE4 MAAPVVAPPGVVVSRANKRSGAGPGGSGGGGARGAEEEPPPPLQAVLVADSFDRRFFPIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MAAPVVAPPGVVVSRANKRSGAGPGGSGGGGARGAEEEPPPPLQAVLVADSFDRRFFPIS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 KDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KDQPRVLLPLANVALIDYTLEFLTATGVQETFVFCCWKAAQIKEHLLKSKWCRPTSLNVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 RIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RIITSELYRSLGDVLRDVDAKALVRSDFLLVYGDVISNINITRALEEHRLRRKLEKNVSV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 MTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MTMIFKESSPSHPTRCHEDNVVVAVDSTTNRVLHFQKTQGLRRFAFPLSLFQGSSDGVEV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 RYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RYDLLDCHISICSPQVAQLFTDNFDYQTRDDFVRGLLVNEEILGNQIHMHVTAKEYGARV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 SNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SNLHMYSAVCADVIRRWVYPLTPEANFTDSTTQSCTHSRHNIYRGPEVSLGHGSILEENV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 LLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LLGSGTVIGSNCFITNSVIGPGCHIGDNVVLDQTYLWQGVRVAAGAQIHQSLLCDNAEVK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 ERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ERVTLKPRSVLTSQVVVGPNITLPEGSVISLHPPDAEEDEDDGEFSDDSGADQEKDKVKM
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 KGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KGYNPAEVGAAGKGYLWKAAGMNMEEEEELQQNLWGLKINMEEESESESEQSMDSEEPDS
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 RGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNVSLKEVMQVLSHVV
       ::::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::
CCDS32 RGGSPQMDDIKVFQNEVLGTLQRGKEENISCDNLVLEINSLKYAYNISLKEVMQVLSHVV
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 LEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 LEFPLQQMDSPLDSSRYCALLLPLLKAWSPVFRNYIKRAADHLEALAAIEDFFLEHEALG
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KE4 ISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSED
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ISMAKVLMAFYQLEILAEETILSWFSQRDTTDKGQQLRKNQQLQRFIQWLKEAEEESSED
              670       680       690       700       710       720

        
pF1KE4 D
       :
CCDS32 D
        




721 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:52:14 2016 done: Sat Nov  5 23:52:14 2016
 Total Scan time:  4.400 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]