FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4560, 685 aa
  1>>>pF1KE4560 685 - 685 aa - 685 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5483+/-0.00123; mu= 17.9351+/- 0.074
 mean_var=62.5653+/-12.473, 0's: 0 Z-trim(100.5): 25  B-trim: 39 in 1/48
 Lambda= 0.162146
 statistics sampled from 6120 (6131) to 6120 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.543), E-opt: 0.2 (0.188), width:  16
 Scan time:  3.040

The best scores are:                                      opt bits E(32554)
CCDS1819.1 SLC3A1 gene_id:6519|Hs108|chr2          ( 685) 4657 1098.8       0


>>CCDS1819.1 SLC3A1 gene_id:6519|Hs108|chr2               (685 aa)
 initn: 4657 init1: 4657 opt: 4657  Z-score: 5882.2  bits: 1098.8 E(32554):    0
Smith-Waterman score: 4657; 99.9% identity (100.0% similar) in 685 aa overlap (1-685:1-685)

               10        20        30        40        50        60
pF1KE4 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWWQE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 REVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRTRTGKYTDYYIWH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 DCTHENGKTIPPNNWLSVYGNSSWHFDEVRNQCYFHQFMKEQPDLNFRNPDVQEEIKEIL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 RFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDI
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 VRSFRQTMDQYSTEPGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSMLDTVS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GNSVYEVITSWMENMPEGKWPNWMIGGPDSSRLTSRLGNQYVNVMNMLLFTLPGTPITYY
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 GEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDV
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 QKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS18 QKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRNDSHYVVYTRELDGIDRIFIVVLNFG
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KE4 ESTLLNLHNMISGLPAKIRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQT
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS18 ESTLLNLHNMISGLPAKMRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQT
              610       620       630       640       650       660

              670       680     
pF1KE4 AFRDRCFVSNRACYSSVLNILYTSC
       :::::::::::::::::::::::::
CCDS18 AFRDRCFVSNRACYSSVLNILYTSC
              670       680     




685 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 23:55:46 2016 done: Sat Nov  5 23:55:46 2016
 Total Scan time:  3.040 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]