FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4549, 651 aa
  1>>>pF1KE4549 651 - 651 aa - 651 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5545+/-0.000996; mu= 17.3867+/- 0.060
 mean_var=61.6013+/-12.613, 0's: 0 Z-trim(103.4): 17  B-trim: 0 in 0/49
 Lambda= 0.163410
 statistics sampled from 7410 (7414) to 7410 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.593), E-opt: 0.2 (0.228), width:  16
 Scan time:  3.440

The best scores are:                                      opt bits E(32554)
CCDS5530.1 GUSB gene_id:2990|Hs108|chr7            ( 651) 4465 1061.7       0
CCDS64665.1 GUSB gene_id:2990|Hs108|chr7           ( 505) 2377 569.4 4.1e-162


>>CCDS5530.1 GUSB gene_id:2990|Hs108|chr7                 (651 aa)
 initn: 4465 init1: 4465 opt: 4465  Z-score: 5682.4  bits: 1061.7 E(32554):    0
Smith-Waterman score: 4465; 100.0% identity (100.0% similar) in 651 aa overlap (1-651:1-651)

               10        20        30        40        50        60
pF1KE4 MARGSAVAWAALGPLLWGCALGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MARGSAVAWAALGPLLWGCALGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITIAINNTLTPTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITIAINNTLTPTT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAGLQRSVLLYTTPTTYIDDITVTTSVEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAGLQRSVLLYTTPTTYIDDITVTTSVEQD
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 SGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVSLWWPYLMHERPAYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVSLWWPYLMHERPAYL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 YSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 FDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNN
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 VSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKSLDPSRPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKSLDPSRPVT
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 FVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 FVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 YGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 YGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTR
              550       560       570       580       590       600

              610       620       630       640       650 
pF1KE4 VLGNKKGIFTRQRQPKSAAFLLRERYWKIANETRYPHSVAKSQCLENSLFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 VLGNKKGIFTRQRQPKSAAFLLRERYWKIANETRYPHSVAKSQCLENSLFT
              610       620       630       640       650 

>>CCDS64665.1 GUSB gene_id:2990|Hs108|chr7                (505 aa)
 initn: 2377 init1: 2377 opt: 2377  Z-score: 3023.9  bits: 569.4 E(32554): 4.1e-162
Smith-Waterman score: 3209; 77.6% identity (77.6% similar) in 651 aa overlap (1-651:1-505)

               10        20        30        40        50        60
pF1KE4 MARGSAVAWAALGPLLWGCALGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 MARGSAVAWAALGPLLWGCALGLQGGMLYPQESPSRECKELDGLWSFRADFSDNRRRGFE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 EQWYRRPLWESGPTVDMPVPSSFNDISQDWRLRHFVGWVWYEREVILPERWTQDLRTRVV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQVGPLPSRLRITIAINNTLTPTT
       :::::::::::::::::::::::::::::::::::::::                     
CCDS64 LRIGSAHSYAIVWVNGVDTLEHEGGYLPFEADISNLVQV---------------------
              130       140       150                              

              190       200       210       220       230       240
pF1KE4 LPPGTIQYLTDTSKYPKGYFVQNTYFDFFNYAGLQRSVLLYTTPTTYIDDITVTTSVEQD
                                                                   
CCDS64 ------------------------------------------------------------
                                                                   

              250       260       270       280       290       300
pF1KE4 SGLVNYQISVKGSNLFKLEVRLLDAENKVVANGTGTQGQLKVPGVSLWWPYLMHERPAYL
                                                                   
CCDS64 ------------------------------------------------------------
                                                                   

              310       320       330       340       350       360
pF1KE4 YSLEVQLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKG
            :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 -----QLTAQTSLGPVSDFYTLPVGIRTVAVTKSQFLINGKPFYFHGVNKHEDADIRGKG
          160       170       180       190       200       210    

              370       380       390       400       410       420
pF1KE4 FDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FDWPLLVKDFNLLRWLGANAFRTSHYPYAEEVMQMCDRYGIVVIDECPGVGLALPQFFNN
          220       230       240       250       260       270    

              430       440       450       460       470       480
pF1KE4 VSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKSLDPSRPVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VSLHHHMQVMEEVVRRDKNHPAVVMWSVANEPASHLESAGYYLKMVIAHTKSLDPSRPVT
          280       290       300       310       320       330    

              490       500       510       520       530       540
pF1KE4 FVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 FVSNSNYAADKGAPYVDVICLNSYYSWYHDYGHLELIQLQLATQFENWYKKYQKPIIQSE
          340       350       360       370       380       390    

              550       560       570       580       590       600
pF1KE4 YGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 YGAETIAGFHQDPPLMFTEEYQKSLLEQYHLGLDQKRRKYVVGELIWNFADFMTEQSPTR
          400       410       420       430       440       450    

              610       620       630       640       650 
pF1KE4 VLGNKKGIFTRQRQPKSAAFLLRERYWKIANETRYPHSVAKSQCLENSLFT
       :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS64 VLGNKKGIFTRQRQPKSAAFLLRERYWKIANETRYPHSVAKSQCLENSLFT
          460       470       480       490       500     




651 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:02:31 2016 done: Sun Nov  6 00:02:31 2016
 Total Scan time:  3.440 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]