FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4544, 634 aa
  1>>>pF1KE4544 634 - 634 aa - 634 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5842+/-0.00114; mu= 17.6915+/- 0.068
 mean_var=68.7414+/-13.687, 0's: 0 Z-trim(102.0): 37  B-trim: 0 in 0/51
 Lambda= 0.154691
 statistics sampled from 6766 (6776) to 6766 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.565), E-opt: 0.2 (0.208), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS5793.1 POT1 gene_id:25913|Hs108|chr7           ( 634) 4230 953.7       0


>>CCDS5793.1 POT1 gene_id:25913|Hs108|chr7                (634 aa)
 initn: 4230 init1: 4230 opt: 4230  Z-score: 5099.3  bits: 953.7 E(32554):    0
Smith-Waterman score: 4230; 100.0% identity (100.0% similar) in 634 aa overlap (1-634:1-634)

               10        20        30        40        50        60
pF1KE4 MSLVPATNYIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MSLVPATNYIYTPLNQLKGGTIVNVYGVVKFFKPPYLSKGTDYCSVVTIVDQTNVKLTCL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LFSGNYEALPIIYKNGDIVRFHRLKIQVYKKETQGITSSGFASLTFEGTLGAPIIPRTSS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 KYFNFTTEDHKMVEALRVWASTHMSPSWTLLKLCDVQPMQYFDLTCQLLGKAEVDGASFL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 LKVWDGTRTPFPSWRVLIQDLVLEGDLSHIHRLQNLTIDILVYDNHVHVARSLKVGSFLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 IYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESANLTAN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 IYSLHTKLQSMNSENQTMLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESANLTAN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 QHSDVICQSEPDDSFPSSGSVSLYEVERCQQLSATILTDHQYLERTPLCAILKQKAPQQY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 RIRAKLRSYKPRRLFQSVKLHCPKCHLLQEVPHEGDLDIIFQDGATKTPDVKLQNTSLYD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RIRAKLRSYKPRRLFQSVKLHCPKCHLLQEVPHEGDLDIIFQDGATKTPDVKLQNTSLYD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 SKIWTTKNQKGRKVAVHFVKNNGILPLSNECLLLIEGGTLSEICKLSNKFNSVIPVRSGH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 SKIWTTKNQKGRKVAVHFVKNNGILPLSNECLLLIEGGTLSEICKLSNKFNSVIPVRSGH
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 EDLELLDLSAPFLIQGTIHHYGCKQCSSLRSIQNLNSLVDKTSWIPSSVAEALGIVPLQY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 EDLELLDLSAPFLIQGTIHHYGCKQCSSLRSIQNLNSLVDKTSWIPSSVAEALGIVPLQY
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 VFVMTFTLDDGTGVLEAYLMDSDKFFQIPASEVLMDDDLQKSVDMIMDMFCPPGIKIDAY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 VFVMTFTLDDGTGVLEAYLMDSDKFFQIPASEVLMDDDLQKSVDMIMDMFCPPGIKIDAY
              550       560       570       580       590       600

              610       620       630    
pF1KE4 PWLECFIKSYNVTNGTDNQICYQIFDTTVAEDVI
       ::::::::::::::::::::::::::::::::::
CCDS57 PWLECFIKSYNVTNGTDNQICYQIFDTTVAEDVI
              610       620       630    




634 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:05:51 2016 done: Sun Nov  6 00:05:52 2016
 Total Scan time:  3.460 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]