FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4537, 605 aa
  1>>>pF1KE4537 605 - 605 aa - 605 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.7806+/-0.000845; mu= 9.2909+/- 0.051
 mean_var=150.8850+/-29.366, 0's: 0 Z-trim(112.6): 24  B-trim: 0 in 0/51
 Lambda= 0.104412
 statistics sampled from 13322 (13341) to 13322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.74), E-opt: 0.2 (0.41), width:  16
 Scan time:  3.520

The best scores are:                                      opt bits E(32554)
CCDS11625.1 PPM1D gene_id:8493|Hs108|chr17         ( 605) 4108 630.5 1.9e-180


>>CCDS11625.1 PPM1D gene_id:8493|Hs108|chr17              (605 aa)
 initn: 4108 init1: 4108 opt: 4108  Z-score: 3353.1  bits: 630.5 E(32554): 1.9e-180
Smith-Waterman score: 4108; 100.0% identity (100.0% similar) in 605 aa overlap (1-605:1-605)

               10        20        30        40        50        60
pF1KE4 MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRPSPAALPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MAGLYSLGVSVFSDQGGRKYMEDVTQIVVEPEPTAEEKPSPRRSLSQPLPPRPSPAALPG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 GEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFAVCDGHGGREAAQFAREHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GEVSGKGPAVAAREARDPLPDAGASPAPSRCCRRRSSVAFFAVCDGHGGREAAQFAREHL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 WGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVII
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WGFIKKQKGFTSSEPAKVCAAIRKGFLACHLAMWKKLAEWPKTMTGLPSTSGTTASVVII
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 RGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERERIEGLGGSVMNKSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RGMKMYVAHVGDSGVVLGIQDDPKDDFVRAVEVTQDHKPELPKERERIEGLGGSVMNKSG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALGDLWSYDFFSGEFVVSPEPDTSVHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 VNRVVWKRPRLTHNGPVRRSTVIDQIPFLAVARALGDLWSYDFFSGEFVVSPEPDTSVHT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LDPQKHKYIILGSDGLWNMIPPQDAISMCQDQEEKKYLMGEHGQSCAKMLVNRALGRWRQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LDPQKHKYIILGSDGLWNMIPPQDAISMCQDQEEKKYLMGEHGQSCAKMLVNRALGRWRQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 RMLRADNTSAIVICISPEVDNQGNFTNEDELYLNLTDSPSYNSQETCVMTPSPCSTPPVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RMLRADNTSAIVICISPEVDNQGNFTNEDELYLNLTDSPSYNSQETCVMTPSPCSTPPVK
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 SLEEDPWPRVNSKDHIPALVRSNAFSENFLEVSAEIARENVQGVVIPSKDPEPLEENCAK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SLEEDPWPRVNSKDHIPALVRSNAFSENFLEVSAEIARENVQGVVIPSKDPEPLEENCAK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 ALTLRIHDSLNNSLPIGLVPTNSTNTVMDQKNLKMSTPGQMKAQEIERTPPTNFKRTLEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ALTLRIHDSLNNSLPIGLVPTNSTNTVMDQKNLKMSTPGQMKAQEIERTPPTNFKRTLEE
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KE4 SNSGPLMKKHRRNGLSRSSGAQPASLPTTSQRKNSVKLTMRRRLRGQKKIGNPLLHQHRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SNSGPLMKKHRRNGLSRSSGAQPASLPTTSQRKNSVKLTMRRRLRGQKKIGNPLLHQHRK
              550       560       570       580       590       600

            
pF1KE4 TVCVC
       :::::
CCDS11 TVCVC
            




605 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:08:59 2016 done: Sun Nov  6 00:09:00 2016
 Total Scan time:  3.520 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]