FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4536, 603 aa
  1>>>pF1KE4536 603 - 603 aa - 603 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3478+/-0.000845; mu= 19.0262+/- 0.051
 mean_var=67.4513+/-13.513, 0's: 0 Z-trim(106.6): 17  B-trim: 253 in 1/54
 Lambda= 0.156163
 statistics sampled from 9055 (9067) to 9055 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.649), E-opt: 0.2 (0.279), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS6977.2 DBH gene_id:1621|Hs108|chr9             ( 617) 4137 941.2       0
CCDS5152.2 MOXD1 gene_id:26002|Hs108|chr6          ( 613) 1053 246.4 8.1e-65


>>CCDS6977.2 DBH gene_id:1621|Hs108|chr9                  (617 aa)
 initn: 4137 init1: 4137 opt: 4137  Z-score: 5032.2  bits: 941.2 E(32554):    0
Smith-Waterman score: 4137; 100.0% identity (100.0% similar) in 603 aa overlap (1-603:15-617)

                             10        20        30        40      
pF1KE4               MREAAFMYSTAVAIFLVILVAALQGSAPRESPLPYHIPLDPEGSLE
                     ::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 MPALSRWASLPGPSMREAAFMYSTAVAIFLVILVAALQGSAPRESPLPYHIPLDPEGSLE
               10        20        30        40        50        60

         50        60        70        80        90       100      
pF1KE4 LSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENADLVVLWTDGDTAYFADAWSDQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LSWNVSYTQEAIHFQLLVRRLKAGVLFGMSDRGELENADLVVLWTDGDTAYFADAWSDQK
               70        80        90       100       110       120

        110       120       130       140       150       160      
pF1KE4 GQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDYLIEDGTVHLVYGILEEPFRSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 GQIHLDPQQDYQLLQVQRTPEGLTLLFKRPFGTCDPKDYLIEDGTVHLVYGILEEPFRSL
              130       140       150       160       170       180

        170       180       190       200       210       220      
pF1KE4 EAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAPNIQIPSQETTYWCYIKELPKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 EAINGSGLQMGLQRVQLLKPNIPEPELPSDACTMEVQAPNIQIPSQETTYWCYIKELPKG
              190       200       210       220       230       240

        230       240       250       260       270       280      
pF1KE4 FSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHFSGPCDSKMKPDRLNYCRHVLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FSRHHIIKYEPIVTKGNEALVHHMEVFQCAPEMDSVPHFSGPCDSKMKPDRLNYCRHVLA
              250       260       270       280       290       300

        290       300       310       320       330       340      
pF1KE4 AWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLVIEGRNDSSGIRLYYTAKLRRF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 AWALGAKAFYYPEEAGLAFGGPGSSRYLRLEVHYHNPLVIEGRNDSSGIRLYYTAKLRRF
              310       320       330       340       350       360

        350       360       370       380       390       400      
pF1KE4 NAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 NAGIMELGLVYTPVMAIPPRETAFILTGYCTDKCTQLALPPSGIHIFASQLHTHLTGRKV
              370       380       390       400       410       420

        410       420       430       440       450       460      
pF1KE4 VTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VTVLVRDGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGG
              430       440       450       460       470       480

        470       480       490       500       510       520      
pF1KE4 FGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLINRFNNEDVCTCPQASVSQQFT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 FGILEEMCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLINRFNNEDVCTCPQASVSQQFT
              490       500       510       520       530       540

        530       540       550       560       570       580      
pF1KE4 SVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVISTLEEPTPQCPTSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 SVPWNSFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVISTLEEPTPQCPTSQ
              550       560       570       580       590       600

        590       600   
pF1KE4 GRSPAGPTVVSIGGGKG
       :::::::::::::::::
CCDS69 GRSPAGPTVVSIGGGKG
              610       

>>CCDS5152.2 MOXD1 gene_id:26002|Hs108|chr6               (613 aa)
 initn: 663 init1: 343 opt: 1053  Z-score: 1277.1  bits: 246.4 E(32554): 8.1e-65
Smith-Waterman score: 1069; 33.1% identity (59.7% similar) in 595 aa overlap (16-589:6-584)

               10        20        30          40        50        
pF1KE4 MREAAFMYSTAVAIFLVILVAALQGSAPRES--PLPYHIPLDPEGSLELSWNVSYTQEAI
                      :..: . : :.:   :    :..  :: ::.  :.:.   .:  :
CCDS51           MCCWPLLLLWGLLPGTAAGGSGRTYPHRTLLDSEGKYWLGWSQRGSQ--I
                         10        20        30        40          

       60        70         80        90       100       110       
pF1KE4 HFQLLVRRLKAG-VLFGMSDRGELENADLVVLWTDGDTAYFADAWSDQKGQIHLDPQQDY
        :.: ::   :: : ::.:  : . .::.::  .     :. : ... . ... : ::::
CCDS51 AFRLQVRT--AGYVGFGFSPTGAMASADIVVGGVAHGRPYLQDYFTNANRELKKDAQQDY
       50          60        70        80        90       100      

       120       130       140       150       160        170      
pF1KE4 QLLQVQRTPEGLTLLFKRPFGTCDPKDYLIEDGTVHLVYGILEEPFRSLEA-INGSGLQM
       .:  ....     . : : . ::: .:  : :.::.....  .:   . ::  .    . 
CCDS51 HLEYAMENSTHTIIEFTRELHTCDINDKSITDSTVRVIWAYHHED--AGEAGPKYHDSNR
        110       120       130       140       150         160    

        180       190       200       210       220       230      
pF1KE4 GLQRVQLLKPNIPEPELPSDACTMEVQAPNIQIPSQETTYWCYIKELPKGFSRHHIIKYE
       : . ..::.:.     : .    ...   .. ::...::::: . ..:    .::.:: :
CCDS51 GTKSLRLLNPE-KTSVLSTALPYFDLVNQDVPIPNKDTTYWCQMFKIPVFQEKHHVIKVE
          170        180       190       200       210       220   

        240       250        260       270       280       290     
pF1KE4 PIVTKGNEALVHHMEVFQCAPEM-DSVPHFSGPCDSKMKPDRLNYCRHVLAAWALGAKAF
       :.. .:.:.::::. ..::. .. ::: . .  :     :: .  :. :. :::.:...:
CCDS51 PVIQRGHESLVHHILLYQCSNNFNDSVLESGHECYHPNMPDAFLTCETVIFAWAIGGEGF
           230       240       250       260       270       280   

         300       310       320       330       340       350     
pF1KE4 YYPEEAGLAFGGPGSSRYLRLEVHYHNPLVIEGRNDSSGIRLYYTAKLRRFNAGIMELGL
        :: ..::..: : . .:. ::::: ::   ::  :.::.::.::  .:...::..: ::
CCDS51 SYPPHVGLSLGTPLDPHYVLLEVHYDNPTYEEGLIDNSGLRLFYTMDIRKYDAGVIEAGL
           290       300       310       320       330       340   

         360       370       380          390       400       410  
pF1KE4 VYTPVMAIPPRETAFILTGYCTDKCTQLALP---PSGIHIFASQLHTHLTGRKVVTVLVR
         .   .:::    :   :.:: .: . ::    :::::.::  ::.::.:: .     :
CCDS51 WVSLFHTIPPGMPEFQSEGHCTLECLEEALEAEKPSGIHVFAVLLHAHLAGRGIRLRHFR
           350       360       370       380       390       400   

            420       430       440       450       460       470  
pF1KE4 DGREWEIVNQDNHYSPHFQEIRMLKKVVSVHPGDVLITSCTYNTEDRELATVGGFGILEE
        :.: ...  :. .. .:::...::.  .. ::: ::: : :::.::   : ::..   :
CCDS51 KGKEMKLLAYDDDFDFNFQEFQYLKEEQTILPGDNLITECRYNTKDRAEMTWGGLSTRSE
           410       420       430       440       450       460   

            480       490       500       510           520        
pF1KE4 MCVNYVHYYPQTQLELCKSAVDAGFLQKYFHLINRFNNED----VCTCPQASVSQQFTSV
       ::..:. :::. .:  : :  :     ... . . .        .   :.   . .: ..
CCDS51 MCLSYLLYYPRINLTRCASIPDIMEQLQFIGVKEIYRPVTTWPFIIKSPKQYKNLSFMDA
           470       480       490       500       510       520   

          530            540       550       560       570         
pF1KE4 ----PWN-----SFNRDVLKALYSFAPISMHCNKSSAVRFQGEWNLQPLPKVISTLEEPT
            :.     :::. ::.      :....:.:..    ..::..: .  .   .:.: 
CCDS51 MNKFKWTKKEGLSFNKLVLS-----LPVNVRCSKTD----NAEWSIQGMTALPPDIERPY
           530       540            550           560       570    

     580       590       600                  
pF1KE4 PQCPTSQGRSPAGPTVVSIGGGKG               
          :   : :                             
CCDS51 KAEPLVCGTSSSSSLHRDFSINLLVCLLLLSCTLSTKSL
          580       590       600       610   




603 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:09:37 2016 done: Sun Nov  6 00:09:37 2016
 Total Scan time:  3.050 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]