FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4527, 576 aa
  1>>>pF1KE4527 576 - 576 aa - 576 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.7432+/-0.00036; mu= 3.2246+/- 0.022
 mean_var=193.5265+/-39.080, 0's: 0 Z-trim(120.1): 6  B-trim: 328 in 2/52
 Lambda= 0.092194
 statistics sampled from 34972 (34979) to 34972 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.41), width:  16
 Scan time: 11.820

The best scores are:                                      opt bits E(85289)
NP_004636 (OMIM: 600272) coilin [Homo sapiens]     ( 576) 3787 516.3  1e-145


>>NP_004636 (OMIM: 600272) coilin [Homo sapiens]          (576 aa)
 initn: 3787 init1: 3787 opt: 3787  Z-score: 2736.9  bits: 516.3 E(85289): 1e-145
Smith-Waterman score: 3787; 100.0% identity (100.0% similar) in 576 aa overlap (1-576:1-576)

               10        20        30        40        50        60
pF1KE4 MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MAASETVRLRLQFDYPPPATPHCTAFWLLVDLNRCRVVTDLISLIRQRFGFSSGAFLGLY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LEGGLLPPAESARLVRDNDCLRVKLEERGVAENSVVISNGDINLSLRKAKKRAFQLEEGE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ETEPDCKYSKKHWKSRENNNNNEKVLDLEPKAVTDQTVSKKNKRKNKATCGTVGDDNEEA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KRKSPKKKEKCEYKKKAKNPKSPKVQAVKDWANQRCSSPKGSARNSLVKAKRKGSVSVCS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KESPSSSSESESCDESISDGPSKVTLEARNSSEKLPTELSKEEPSTKNTTADKLAIKLGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTVGLFAGRGRPGPGLSSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 SLTPSKGKTSGTTSSSSDSSAESDDQCLMSSSTPECAAGFLKTVGLFAGRGRPGPGLSSQ
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 TAGAAGWRRSGSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKGAKGRGMRGRGRGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TAGAAGWRRSGSNGGGQAPGASPSVSLPASLGRGWGREENLFSWKGAKGRGMRGRGRGRG
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 HPVSCVVNRSTDNQRQQQLNDVVKNSSTIIQNPVETPKKDYSLLPLLAAAPQVGEKIAFK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HPVSCVVNRSTDNQRQQQLNDVVKNSSTIIQNPVETPKKDYSLLPLLAAAPQVGEKIAFK
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 LLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFDLVYHNENGAEVV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LLELTSSYSPDVSDYKEGRILSHNPETQQVDIEILSSLPALREPGKFDLVYHNENGAEVV
              490       500       510       520       530       540

              550       560       570      
pF1KE4 EYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA
       ::::::::::::::::::::::::::::::::::::
NP_004 EYAVTQESKITVFWKELIDPRLIIESPSNTSSTEPA
              550       560       570      




576 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:13:42 2016 done: Sun Nov  6 00:13:44 2016
 Total Scan time: 11.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]