FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4523, 563 aa
  1>>>pF1KE4523 563 - 563 aa - 563 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0952+/-0.000747; mu= 14.5995+/- 0.045
 mean_var=74.2533+/-14.905, 0's: 0 Z-trim(109.6): 25  B-trim: 0 in 0/51
 Lambda= 0.148839
 statistics sampled from 10958 (10969) to 10958 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.337), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(32554)
CCDS7770.1 TPP1 gene_id:1200|Hs108|chr11           ( 563) 3849 835.7       0


>>CCDS7770.1 TPP1 gene_id:1200|Hs108|chr11                (563 aa)
 initn: 3849 init1: 3849 opt: 3849  Z-score: 4463.5  bits: 835.7 E(32554):    0
Smith-Waterman score: 3849; 99.8% identity (100.0% similar) in 563 aa overlap (1-563:1-563)

               10        20        30        40        50        60
pF1KE4 MGLQACLLGLFALILSGKCSYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MGLQACLLGLFALILSGKCSYSPEPDQRRTLPPGWVSLGRADPEEELSLTFALRQQNVER
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LSELVQAVSDPSSPQYGKYLTLENVADLVRPSPLTLHTVQKWLLAAGAQKCHSVITQDFL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 TCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 TCWLSIRQAELLLPGAEFHHYVGGPTETHVVRSPHPYQLPQALAPHVDFVGGLHRFPPTS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SLRQRPEPQVTGTVGLHLGVTPSVIRKRYNLTSQDVGSGTSNNSQACAQFLEQYFHDSDL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 AQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AQFMRLFGGNFAHQASVARVVGQQGRGRAGIEASLDVQYLMSAGANISTWVYSSPGRHEG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 QEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QEPFLQWLMLLSNESALPHVHTVSYGDDEDSLSSAYIQRVNTELMKAAARGLTLLFASGD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 SGAGCWSVSGRHEFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPS
       ::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSFQEPFLITNEIVDYISGGGFSNVFPRPS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 YQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YQEEAVTKFLSSSPHLPPSSYFNASGRAYPDVAALSDGYWVVSNRVPIPWVSGTSASTPV
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 FGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FGGILSLINEHRILSGRPPLGFLNPRLYQQHGAGLFDVTRGCHESCLDEEVEGQGFCSGP
              490       500       510       520       530       540

              550       560   
pF1KE4 GWDPVTGWGTPNFPALLKTLLNP
       :::::::::::::::::::::::
CCDS77 GWDPVTGWGTPNFPALLKTLLNP
              550       560   




563 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:15:33 2016 done: Sun Nov  6 00:15:33 2016
 Total Scan time:  3.190 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]