FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4514, 546 aa
  1>>>pF1KE4514 546 - 546 aa - 546 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6574+/-0.000695; mu= 13.3369+/- 0.042
 mean_var=119.7691+/-24.460, 0's: 0 Z-trim(113.6): 42  B-trim: 0 in 0/53
 Lambda= 0.117193
 statistics sampled from 14216 (14257) to 14216 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.438), width:  16
 Scan time:  3.930

The best scores are:                                      opt bits E(32554)
CCDS8856.1 AAAS gene_id:8086|Hs108|chr12           ( 546) 3852 662.1 4.6e-190
CCDS53797.1 AAAS gene_id:8086|Hs108|chr12          ( 513) 2580 447.1 2.4e-125


>>CCDS8856.1 AAAS gene_id:8086|Hs108|chr12                (546 aa)
 initn: 3852 init1: 3852 opt: 3852  Z-score: 3525.7  bits: 662.1 E(32554): 4.6e-190
Smith-Waterman score: 3852; 100.0% identity (100.0% similar) in 546 aa overlap (1-546:1-546)

               10        20        30        40        50        60
pF1KE4 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSVRVYNA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 ASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSVRVYNA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 SSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 SSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KE4 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS88 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH
              490       500       510       520       530       540

             
pF1KE4 SPHSHL
       ::::::
CCDS88 SPHSHL
             

>>CCDS53797.1 AAAS gene_id:8086|Hs108|chr12               (513 aa)
 initn: 3593 init1: 2562 opt: 2580  Z-score: 2363.8  bits: 447.1 E(32554): 2.4e-125
Smith-Waterman score: 3534; 94.0% identity (94.0% similar) in 546 aa overlap (1-546:1-513)

               10        20        30        40        50        60
pF1KE4 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MCSLGLFPPPPPRGQVTLYEHNNELVTGSSYESPPPDFRGQWINLPVLQLTKDPLKTPGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LDHGTRTAFIHHREQVWKRCINIWRDVGLFGVLNEIANSEEEVFEWVKTASGWALALCRW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 ASSLHGSLFPHLSLRSEDLIAEFAQVTNWSSCCLRVFAWHPHTNKFAVALLDDSVRVYNA
       ::::::::::::::::::::::::::::   :                            
CCDS53 ASSLHGSLFPHLSLRSEDLIAEFAQVTN---C----------------------------
              130       140                                        

              190       200       210       220       230       240
pF1KE4 SSTIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 --TIVPSLKHRLQRNVASLAWKPLSASVLAVACQSCILIWTLDPTSLSTRPSSGCAQVLS
       150       160       170       180       190       200       

              250       260       270       280       290       300
pF1KE4 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HPGHTPVTSLAWAPSGGRLLSASPVDAAIRVWDVSTETCVPLPWFRGGGVTNLLWSPDGS
       210       220       230       240       250       260       

              310       320       330       340       350       360
pF1KE4 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 KILATTPSAVFRVWEAQMWTCERWPTLSGRCQTGCWSPDGSRLLFTVLGEPLIYSLSFPE
       270       280       290       300       310       320       

              370       380       390       400       410       420
pF1KE4 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 RCGEGKGCVGGAKSATIVADLSETTIQTPDGEERLGGEAHSMVWDPSGERLAVLMKGKPR
       330       340       350       360       370       380       

              430       440       450       460       470       480
pF1KE4 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 VQDGKPVILLFRTRNSPVFELLPCGIIQGEPGAQPQLITFHPSFNKGALLSVGWSTGRIA
       390       400       410       420       430       440       

              490       500       510       520       530       540
pF1KE4 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 HIPLYFVNAQFPRFSPVLGRAQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPH
       450       460       470       480       490       500       

             
pF1KE4 SPHSHL
       ::::::
CCDS53 SPHSHL
       510   




546 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:20:00 2016 done: Sun Nov  6 00:20:01 2016
 Total Scan time:  3.930 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]