Result of FASTA (omim) for
pFN21AE4512
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4512, 540 aa
1>>>pF1KE4512 540 - 540 aa - 540 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.6759+/-0.00036; mu= -6.5765+/- 0.022
mean_var=295.5393+/-60.863, 0's: 0 Z-trim(123.0): 3 B-trim: 364 in 1/57
Lambda= 0.074605
statistics sampled from 42052 (42061) to 42052 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.805), E-opt: 0.2 (0.493), width: 16
Scan time: 10.160
The best scores are: opt bits E(85289)
NP_004416 (OMIM: 247100,602201) extracellular matr ( 540) 3915 434.9 3.1e-121
NP_001189787 (OMIM: 247100,602201) extracellular m ( 567) 3426 382.2 2.2e-105
NP_073155 (OMIM: 247100,602201) extracellular matr ( 415) 1830 210.4 9e-54
>>NP_004416 (OMIM: 247100,602201) extracellular matrix p (540 aa)
initn: 3915 init1: 3915 opt: 3915 Z-score: 2297.6 bits: 434.9 E(85289): 3.1e-121
Smith-Waterman score: 3915; 99.6% identity (99.8% similar) in 540 aa overlap (1-540:1-540)
10 20 30 40 50 60
pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_004 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
430 440 450 460 470 480
490 500 510 520 530 540
pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
490 500 510 520 530 540
>>NP_001189787 (OMIM: 247100,602201) extracellular matri (567 aa)
initn: 3417 init1: 3417 opt: 3426 Z-score: 2012.8 bits: 382.2 E(85289): 2.2e-105
Smith-Waterman score: 3842; 94.7% identity (94.9% similar) in 567 aa overlap (1-540:1-567)
10 20 30 40 50 60
pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
10 20 30 40 50 60
70 80 90
pF1KE4 DSSQHGPPFEGQSQ---------------------------VQPPPSQEATPLQQEKLLP
::::::::::::: :::::::::::::::::::
NP_001 DSSQHGPPFEGQSGKEGRGPRPHSQPWLGERVGCSHIPPSIVQPPPSQEATPLQQEKLLP
70 80 90 100 110 120
100 110 120 130 140 150
pF1KE4 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQ
:::::::::::::::::::::::::::::::::::: :::::::::::::::::::::::
NP_001 AQLPAEKEVGPPLPQEAVPLQKELPSLQHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQ
130 140 150 160 170 180
160 170 180 190 200 210
pF1KE4 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DRSQGGWGHRLDGFPPGRPSPDNLNQICLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KE4 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EIGYSRCCHCRSHTNRLECAKLVWEEAMSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEE
250 260 270 280 290 300
280 290 300 310 320 330
pF1KE4 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 APQPHYQLRACPSHQPDISSGLELPFPPGVPTLDNIKNICHLRRFRSVPRNLPATDPLQR
310 320 330 340 350 360
340 350 360 370 380 390
pF1KE4 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELLALIQLEREFQRCCRQGNNHTCTWKAWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRD
370 380 390 400 410 420
400 410 420 430 440 450
pF1KE4 ECFARRAPYPNYDRDILTIDISRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
NP_001 ECFARRAPYPNYDRDILTIDIGRVTPNLMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLP
430 440 450 460 470 480
460 470 480 490 500 510
pF1KE4 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPEQACCAEEEKLTFINDLCGPRRNIWRDPALCCYLSPGDEQVNCFNINYLRNVALVSGD
490 500 510 520 530 540
520 530 540
pF1KE4 TENAKGQGEQGSTGGTNISSTSEPKEE
:::::::::::::::::::::::::::
NP_001 TENAKGQGEQGSTGGTNISSTSEPKEE
550 560
>>NP_073155 (OMIM: 247100,602201) extracellular matrix p (415 aa)
initn: 1829 init1: 1791 opt: 1830 Z-score: 1086.4 bits: 210.4 E(85289): 9e-54
Smith-Waterman score: 2728; 76.5% identity (76.7% similar) in 540 aa overlap (1-540:1-415)
10 20 30 40 50 60
pF1KE4 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 MGTTARAALVLTYLAVASAASEGGFTATGQRQLRPEHFQEVGYAAPPSPPLSRSLPMDHP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 DSSQHGPPFEGQSQVQPPPSQEATPLQQEKLLPAQLPAEKEVGPPLPQEAVPLQKELPSL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 QHPNEQKEGMPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 QHPNEQKEGTPAPFGDQSHPEPESWNAAQHCQQDRSQGGWGHRLDGFPPGRPSPDNLNQI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWEEA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 CLPNRQHVVYGPWNLPQSSYSHLTRQGETLNFLEIGYSRCCHCRSHTNRLECAKLVWE--
190 200 210 220 230
250 260 270 280 290 300
pF1KE4 MSRFCEAEFSVKTRPHWCCTRQGEARFSCFQEEAPQPHYQLRACPSHQPDISSGLELPFP
NP_073 ------------------------------------------------------------
310 320 330 340 350 360
pF1KE4 PGVPTLDNIKNICHLRRFRSVPRNLPATDPLQRELLALIQLEREFQRCCRQGNNHTCTWK
NP_073 ------------------------------------------------------------
370 380 390 400 410 420
pF1KE4 AWEDTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDISRVTPN
:::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
NP_073 ---DTLDKYCDREYAVKTHHHLCCRHPPSPTRDECFARRAPYPNYDRDILTIDIGRVTPN
240 250 260 270 280 290
430 440 450 460 470 480
pF1KE4 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 LMGHLCGNQRVLTKHKHIPGLIHNMTARCCDLPFPEQACCAEEEKLTFINDLCGPRRNIW
300 310 320 330 340 350
490 500 510 520 530 540
pF1KE4 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_073 RDPALCCYLSPGDEQVNCFNINYLRNVALVSGDTENAKGQGEQGSTGGTNISSTSEPKEE
360 370 380 390 400 410
540 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 00:20:35 2016 done: Sun Nov 6 00:20:37 2016
Total Scan time: 10.160 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]