FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4503, 528 aa
  1>>>pF1KE4503 528 - 528 aa - 528 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.7030+/-0.00103; mu= -9.1851+/- 0.062
 mean_var=380.0313+/-78.333, 0's: 0 Z-trim(116.0): 51  B-trim: 8 in 1/50
 Lambda= 0.065791
 statistics sampled from 16582 (16626) to 16582 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.511), width:  16
 Scan time:  4.440

The best scores are:                                      opt bits E(32554)
CCDS34389.1 CDSN gene_id:1041|Hs108|chr6           ( 529) 3551 350.8 2.2e-96


>>CCDS34389.1 CDSN gene_id:1041|Hs108|chr6                (529 aa)
 initn: 2649 init1: 2649 opt: 3551  Z-score: 1843.9  bits: 350.8 E(32554): 2.2e-96
Smith-Waterman score: 3551; 99.2% identity (99.8% similar) in 529 aa overlap (1-528:1-529)

               10        20        30        40        50        60
pF1KE4 MGSSRAPWMGRVGGHGMLALLLAGLLLPGTLAKSIGTFSDPCKDPTRITSPNDPCLTGKG
       :::::::::::::::::.::::::::::::::::::::::::::::::::::::::::::
CCDS34 MGSSRAPWMGRVGGHGMMALLLAGLLLPGTLAKSIGTFSDPCKDPTRITSPNDPCLTGKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 DSSGFSSYSGSSSSGSSISSARSSGGGSSGSSSGSSIAQGGSAGSFKPGTGYSQVSYSSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 DSSGFSSYSGSSSSGSSISSARSSGGGSSGSSSGSSIAQGGSAGSFKPGTGYSQVSYSSG
               70        80        90       100       110       120

              130       140       150        160       170         
pF1KE4 SGSSLQGASGSSQLGSSSSHSGSSGSHSGSSS-HSSSSSSFQFSSSSFQVGNGSALPTND
       ::::::::::::::::::::::.::::::::: :::::::::::::::::::::::::::
CCDS34 SGSSLQGASGSSQLGSSSSHSGNSGSHSGSSSSHSSSSSSFQFSSSSFQVGNGSALPTND
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE4 NSYRGILNPSQPGQSSSSSQTFGVSSSGQSVSSNQRPCSSDIPDSPCSGGPIVSHSGPYI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NSYRGILNPSQPGQSSSSSQTFGVSSSGQSVSSNQRPCSSDIPDSPCSGGPIVSHSGPYI
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE4 PSSHSVSGGQRPVVVVVDQHGSGAPGVVQGPPCSNGGLPGKPCPPITSVDKSYGGYEVVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PSSHSVSGGQRPVVVVVDQHGSGAPGVVQGPPCSNGGLPGKPCPPITSVDKSYGGYEVVG
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE4 GSSDSYLVPGMTYSKGKIYPVGYFTKENPVKGSPGVPSFAAGPPISEGKYFSSNPIIPSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 GSSDSYLVPGMTYSKGKIYPVGYFTKENPVKGSPGVPSFAAGPPISEGKYFSSNPIIPSQ
              310       320       330       340       350       360

     360       370       380       390       400       410         
pF1KE4 SAASSAIAFQPVGTGGVQLCGGGSTGSKGPCSPSSSRVPSSSSISSSSGLPYHPCGSASQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SAASSAIAFQPVGTGGVQLCGGGSTGSKGPCSPSSSRVPSSSSISSSSGLPYHPCGSASQ
              370       380       390       400       410       420

     420       430       440       450       460       470         
pF1KE4 SPCSPPGTGSFSSSSSSQSSGKIILQPCGSKSSSSGHPCMSVSSLTLTGGPDGSPHPDPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPCSPPGTGSFSSSSSSQSSGKIILQPCGSKSSSSGHPCMSVSSLTLTGGPDGSPHPDPS
              430       440       450       460       470       480

     480       490       500       510       520        
pF1KE4 AGAKPCGSSSAGKIPCRSIRDILAQVKPLGPQLADPEVFLPQGELLDSP
       ::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS34 AGAKPCGSSSAGKIPCRSIRDILAQVKPLGPQLADPEVFLPQGELLNSP
              490       500       510       520         




528 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:24:40 2016 done: Sun Nov  6 00:24:41 2016
 Total Scan time:  4.440 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]