Result of FASTA (omim) for
pFN21AE4488
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4488, 510 aa
1>>>pF1KE4488 510 - 510 aa - 510 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2420+/-0.000381; mu= 9.8908+/- 0.024
mean_var=140.1329+/-28.487, 0's: 0 Z-trim(117.0): 14 B-trim: 504 in 2/54
Lambda= 0.108344
statistics sampled from 28584 (28597) to 28584 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.335), width: 16
Scan time: 9.990
The best scores are: opt bits E(85289)
NP_005561 (OMIM: 227300,601567) protein ERGIC-53 p ( 510) 3454 551.7 1.9e-156
NP_068591 (OMIM: 609548) protein ERGIC-53-like pre ( 526) 1000 168.1 5.7e-41
NP_006807 (OMIM: 609551) vesicular integral-membra ( 356) 570 100.8 7.1e-21
NP_110432 (OMIM: 609552,616887) VIP36-like protein ( 348) 528 94.2 6.6e-19
NP_001135764 (OMIM: 609552,616887) VIP36-like prot ( 359) 319 61.5 4.6e-09
NP_001309279 (OMIM: 609552,616887) VIP36-like prot ( 210) 306 59.3 1.2e-08
NP_001309280 (OMIM: 609552,616887) VIP36-like prot ( 203) 225 46.7 7.8e-05
NP_001309284 (OMIM: 609552,616887) VIP36-like prot ( 203) 225 46.7 7.8e-05
NP_001309285 (OMIM: 609552,616887) VIP36-like prot ( 203) 225 46.7 7.8e-05
NP_001309275 (OMIM: 609552,616887) VIP36-like prot ( 214) 225 46.7 8.2e-05
NP_001309283 (OMIM: 609552,616887) VIP36-like prot ( 214) 225 46.7 8.2e-05
NP_001309276 (OMIM: 609552,616887) VIP36-like prot ( 221) 225 46.7 8.4e-05
NP_001309281 (OMIM: 609552,616887) VIP36-like prot ( 221) 225 46.7 8.4e-05
>>NP_005561 (OMIM: 227300,601567) protein ERGIC-53 precu (510 aa)
initn: 3454 init1: 3454 opt: 3454 Z-score: 2929.8 bits: 551.7 E(85289): 1.9e-156
Smith-Waterman score: 3454; 99.8% identity (100.0% similar) in 510 aa overlap (1-510:1-510)
10 20 30 40 50 60
pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEYKYSFKGPHLVQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEYKYSFKGPHLVQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 DGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 DGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 DGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 QGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 DKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 DKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHLEIKQLNRQLDMILDEQR
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 RYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEILRQVNEMKNSLSETVRLVSGM
:::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::
NP_005 RYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEILRQVNEMKNSMSETVRLVSGM
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 QHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCPELPPFPSCLSTVH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCPELPPFPSCLSTVH
430 440 450 460 470 480
490 500 510
pF1KE4 FIIFVVVQTVLFIGYIMYRSQQEAAAKKFF
::::::::::::::::::::::::::::::
NP_005 FIIFVVVQTVLFIGYIMYRSQQEAAAKKFF
490 500 510
>>NP_068591 (OMIM: 609548) protein ERGIC-53-like precurs (526 aa)
initn: 900 init1: 435 opt: 1000 Z-score: 856.6 bits: 168.1 E(85289): 5.7e-41
Smith-Waterman score: 1000; 35.5% identity (66.3% similar) in 501 aa overlap (15-501:9-486)
10 20 30 40 50 60
pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEYKYSFKGPHLVQS
:::: ::: : : : : :::::: :::::.:.
NP_068 MPAVSGPGPLFCLLLLLLDPHSPETGC---P----PLRRFEYKLSFKGPRLALP
10 20 30 40
70 80 90 100 110 120
pF1KE4 DGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGA
. .:::.: :.:: . ...:..::.... :.::..... : ::::: .:::: :: ::
NP_068 GAGIPFWSHHGDAILGLEEVRLTPSMRNRSGAVWSRASVPFSAWEVEVQMRVTGLGRRGA
50 60 70 80 90 100
130 140 150 160 170 180
pF1KE4 DGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQN
.:.:.::....: : :.:. :.:.:::::: .: ...::: .....:.: .. .
NP_068 QGMAVWYTRGRGHVGSVLGGLASWDGIGIFFDSPAED-TQDSPAIRVLASDGHIPSEQPG
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 DGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPA
:::::.:.::. ::::.:.: ::.:::. . : . .:.:.::. . :::. : ...
NP_068 DGASQGLGSCHWDFRNRPHPFRARITYWGQRLRMSLNSGLTPS-DPGEFCVDVGPLLLVP
170 180 190 200 210 220
250 260 270 280 290
pF1KE4 QGHFGISAATGGLADDHDVLSFLTFQLTEPGKE-PPTPDKEISEKEKEKYQEEFEHFQQE
: ::.::::: :::::::::::::.:.::. : :: : :. .. . : : .
NP_068 GGFFGVSAATGTLADDHDVLSFLTFSLSEPSPEVPPQPFLEM-QQLRLARQLEGLWARLG
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE4 LDKKKEEFQKGHPDLQGQPAEEIF---ESVG-DRELRQVFEGQNRIHLEIKQLNRQLDMI
: ... :. . ::. .:..: :..: :.. :...: .. .. : .::
NP_068 LGTREDVTPKSDSEAQGE-GERLFDLEETLGRHRRILQALRGLSK---QLAQAERQWKKQ
290 300 310 320 330 340
360 370 380 390 400
pF1KE4 LDE--QRRYVSSLTEEISKRGAGMPGQHGQITQQ------ELDTVVKTQHEILRQVNEMK
: : : .. . . : . . ::. :..... .. .... : .:. ..::.
NP_068 LGPPGQARPDGGWALDASCQIPSTPGRGGHLSMSLNKDSAKVGALLHGQWTLLQALQEMR
350 360 370 380 390 400
410 420 430 440 450 460
pF1KE4 NSLSETVRLVSGMQHPGSAGGVYETTQHFIDIKEHLHIVKRDIDNLVQRNMPSNEKPKCP
.. .::... : :. .::... . : ...... . .. . . :. :
NP_068 DA---AVRMAAEAQVSYLPVGI---EHHFLELDHILGLLQEELRGPAK---AAAKAPRPP
410 420 430 440 450
470 480 490 500 510
pF1KE4 ELPPFPS-CLSTVHFIIFVVVQTVLFIGYIMYRSQQEAAAKKFF
:: : ::. :......::: :.::. .:..
NP_068 GQPPRASSCLQPGIFLFYLLIQTVGFFGYVHFRQELNKSLQECLSTGSLPLGPAPHTPRA
460 470 480 490 500 510
NP_068 LGILRRQPLPASMPA
520
>>NP_006807 (OMIM: 609551) vesicular integral-membrane p (356 aa)
initn: 408 init1: 160 opt: 570 Z-score: 495.7 bits: 100.8 E(85289): 7.1e-21
Smith-Waterman score: 570; 33.2% identity (64.8% similar) in 301 aa overlap (15-310:32-316)
10 20 30 40
pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHR
::: ::: :: : .: . :. :
NP_006 AAEGWIWRWGWGRRCLGRPGLLGPGPGPTTPLF--LLLLLGS-VTADITDGNS----EHL
10 20 30 40 50
50 60 70 80 90 100
pF1KE4 RFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENW
. :. :. :. .....:.: :... .:. .:..:. .:..::.:.. ...:
NP_006 KREH--SLIKPYQGVGSSSMPLWDFQGSTMLTSQYVRLTPDERSKEGSIWNHQPCFLKDW
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE4 EVEVTFRVTGRGR--IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDND--GKK
:..: :.: : :. . .::.:.::.... . :::::: : ..:..::.:.. :: ..
NP_006 EMHVHFKVHGTGKKNLHGDGIALWYTRDRLVPGPVFGSKDNFHGLAIFLDTYPNDETTER
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE4 NNPAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGF
: : .. :::.. :::..:: ::.: ::::. . . . : .. :::: .
NP_006 VFPYISVMVNNGSLSYDHSKDGRWTELAGCTADFRNRDHDTFLAVRYSRGRLTVMTD---
180 190 200 210 220
230 240 250 260 270 280
pF1KE4 TPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKE
:::... : . .. .:. .:: ::.:: :.:.::..:. ::: :::.:
NP_006 LEDKNEWKNCIDITGVRLPTGYYFGASAGTGDLSDNHDIISMKLFQLMV----EHTPDEE
230 240 250 260 270 280
290 300 310 320 330
pF1KE4 ISEKEKEKYQEEF-EHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQN
. : . . .: . ....: .:..:
NP_006 SIDWTKIEPSVNFLKSPKDNVDDPTGNFRSGPLTGWRVFLLLLCALLGIVVCAVVGAVVF
290 300 310 320 330 340
340 350 360 370 380 390
pF1KE4 RIHLEIKQLNRQLDMILDEQRRYVSSLTEEISKRGAGMPGQHGQITQQELDTVVKTQHEI
NP_006 QKRQERNKRFY
350
>>NP_110432 (OMIM: 609552,616887) VIP36-like protein iso (348 aa)
initn: 265 init1: 180 opt: 528 Z-score: 460.4 bits: 94.2 E(85289): 6.6e-19
Smith-Waterman score: 528; 33.6% identity (62.7% similar) in 271 aa overlap (6-268:15-275)
10 20 30 40
pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEY---
.: : :: . ::: :: :.: : . . :::
NP_110 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGS---GQG----PQQVGAGQTFEYLKR
10 20 30 40 50
50 60 70 80 90 100
pF1KE4 KYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEV
..:.. :. . :. .: :::. .. ::..:...:..:..:... ...::..:
NP_110 EHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQV
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE4 TFRVTGRGR--IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNN---P
:.. :.:. . .:::::::.... :::::. : . :.:.: :.. :. :... :
NP_110 HFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQERVFP
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE4 AIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFTPD
: . :::.. :::. :: :..: :: : . : : . ::.:..
NP_110 YISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMD---IDG
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE4 KNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEISE
:.... : .: .. .: .:: :. :: :.:.:::.:. :.::
NP_110 KHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRDVF
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE4 KEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRIHL
NP_110 LPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
300 310 320 330 340
>>NP_001135764 (OMIM: 609552,616887) VIP36-like protein (359 aa)
initn: 433 init1: 142 opt: 319 Z-score: 283.6 bits: 61.5 E(85289): 4.6e-09
Smith-Waterman score: 506; 32.3% identity (60.3% similar) in 282 aa overlap (6-268:15-286)
10 20 30 40
pF1KE4 MAGSRQRGLRARVRPLFCALLLSLGRFVRGDGVGGDPAVALPHRRFEY---
.: : :: . ::: :: :.: : . . :::
NP_001 MAATLGPLGSWQQWRRCLSARDGSRMLLLLLLLGS---GQG----PQQVGAGQTFEYLKR
10 20 30 40 50
50 60 70 80 90 100
pF1KE4 KYSFKGPHLVQSDGTVPFWAHAGNAIPSSDQIRVAPSLKSQRGSVWTKTKAAFENWEVEV
..:.. :. . :. .: :::. .. ::..:...:..:..:... ...::..:
NP_001 EHSLSKPYQGVGTGSSSLWNLMGNAMVMTQYIRLTPDMQSKQGALWNRVPCFLRDWELQV
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE4 TFRVTGRGR--IGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNN----
:.. :.:. . .:::::::.... :::::. : . :.:.: :.. :. :...
NP_001 HFKIHGQGKKNLHGDGLAIWYTKDRMQPGPVFGNMDKFVGLGVFVDTYPNEEKQQEAQKR
120 130 140 150 160 170
170 180 190 200 210
pF1KE4 ----------PAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTL
: : . :::.. :::. :: :..: :: : . : : . :
NP_001 RYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHL
180 190 200 210 220 230
220 230 240 250 260 270
pF1KE4 TVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGK
:.:.. :.... : .: .. .: .:: :. :: :.:.:::.:. :.::
NP_001 TIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERT
240 250 260 270 280 290
280 290 300 310 320 330
pF1KE4 EPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELR
NP_001 PEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKW
300 310 320 330 340 350
>>NP_001309279 (OMIM: 609552,616887) VIP36-like protein (210 aa)
initn: 253 init1: 114 opt: 306 Z-score: 275.9 bits: 59.3 E(85289): 1.2e-08
Smith-Waterman score: 306; 36.5% identity (62.8% similar) in 137 aa overlap (135-268:4-137)
110 120 130 140 150 160
pF1KE4 EVEVTFRVTGRGRIGADGLAIWYAENQGLEGPVFGSADLWNGVGIFFDSFDNDGKKNN--
:::::. : . :.:.: :.. :. :...
NP_001 MQPGPVFGNMDKFVGLGVFVDTYPNEEKQQERV
10 20 30
170 180 190 200 210 220
pF1KE4 -PAIVIIGNNGQIHYDHQNDGASQALASCQRDFRNKPYPVRAKITYYQNTLTVMINNGFT
: : . :::.. :::. :: :..: :: : . : : . ::.:..
NP_001 FPYISAMVNNGSLSYDHERDGRPTELGGCTAIVRNLHYDTFLVIRYVKRHLTIMMD---I
40 50 60 70 80 90
230 240 250 260 270 280
pF1KE4 PDKNDYEFCAKVENMIIPAQGHFGISAATGGLADDHDVLSFLTFQLTEPGKEPPTPDKEI
:.... : .: .. .: .:: :. :: :.:.:::.:. :.::
NP_001 DGKHEWRDCIEVPGVRLPRGYYFGTSSITGDLSDNHDVISLKLFELTVERTPEEEKLHRD
100 110 120 130 140 150
290 300 310 320 330 340
pF1KE4 SEKEKEKYQEEFEHFQQELDKKKEEFQKGHPDLQGQPAEEIFESVGDRELRQVFEGQNRI
NP_001 VFLPSVDNMKLPEMTAPLPPLSGLALFLIVFFSLVFSVFAIVIGIILYNKWQEQSRKRFY
160 170 180 190 200 210
>>NP_001309280 (OMIM: 609552,616887) VIP36-like protein (203 aa)
initn: 220 init1: 114 opt: 225 Z-score: 207.7 bits: 46.7 E(85289): 7.8e-05
Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:28-130)
140 150 160 170 180 190
pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR
: : . :::.. :::. :: :..:
NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA
10 20 30 40 50
200 210 220 230 240 250
pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG
:: : . : : . ::.:.. :.... : .: .. .: .:: :. ::
NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD
60 70 80 90 100 110
260 270 280 290 300 310
pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP
:.:.:::.:. :.::
NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF
120 130 140 150 160 170
>>NP_001309284 (OMIM: 609552,616887) VIP36-like protein (203 aa)
initn: 220 init1: 114 opt: 225 Z-score: 207.7 bits: 46.7 E(85289): 7.8e-05
Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:28-130)
140 150 160 170 180 190
pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR
: : . :::.. :::. :: :..:
NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA
10 20 30 40 50
200 210 220 230 240 250
pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG
:: : . : : . ::.:.. :.... : .: .. .: .:: :. ::
NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD
60 70 80 90 100 110
260 270 280 290 300 310
pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP
:.:.:::.:. :.::
NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF
120 130 140 150 160 170
>>NP_001309285 (OMIM: 609552,616887) VIP36-like protein (203 aa)
initn: 220 init1: 114 opt: 225 Z-score: 207.7 bits: 46.7 E(85289): 7.8e-05
Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:28-130)
140 150 160 170 180 190
pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR
: : . :::.. :::. :: :..:
NP_001 MDKERRICMGMAWQSGTQRIGCSQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA
10 20 30 40 50
200 210 220 230 240 250
pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG
:: : . : : . ::.:.. :.... : .: .. .: .:: :. ::
NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD
60 70 80 90 100 110
260 270 280 290 300 310
pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP
:.:.:::.:. :.::
NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF
120 130 140 150 160 170
>>NP_001309275 (OMIM: 609552,616887) VIP36-like protein (214 aa)
initn: 220 init1: 114 opt: 225 Z-score: 207.4 bits: 46.7 E(85289): 8.2e-05
Smith-Waterman score: 225; 35.8% identity (60.4% similar) in 106 aa overlap (163-268:39-141)
140 150 160 170 180 190
pF1KE4 LEGPVFGSADLWNGVGIFFDSFDNDGKKNNPAIVIIGNNGQIHYDHQNDGASQALASCQR
: : . :::.. :::. :: :..:
NP_001 MGMAWQSGTQRIGCSQAQKRRYSPGVQRVFPYISAMVNNGSLSYDHERDGRPTELGGCTA
10 20 30 40 50 60
200 210 220 230 240 250
pF1KE4 DFRNKPYPVRAKITYYQNTLTVMINNGFTPDKNDYEFCAKVENMIIPAQGHFGISAATGG
:: : . : : . ::.:.. :.... : .: .. .: .:: :. ::
NP_001 IVRNLHYDTFLVIRYVKRHLTIMMD---IDGKHEWRDCIEVPGVRLPRGYYFGTSSITGD
70 80 90 100 110 120
260 270 280 290 300 310
pF1KE4 LADDHDVLSFLTFQLTEPGKEPPTPDKEISEKEKEKYQEEFEHFQQELDKKKEEFQKGHP
:.:.:::.:. :.::
NP_001 LSDNHDVISLKLFELTVERTPEEEKLHRDVFLPSVDNMKLPEMTAPLPPLSGLALFLIVF
130 140 150 160 170 180
510 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 00:48:32 2016 done: Sun Nov 6 00:48:33 2016
Total Scan time: 9.990 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]