Result of FASTA (ccds) for
pFN21AE4481
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4481, 498 aa
1>>>pF1KE4481 498 - 498 aa - 498 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.8691+/-0.000947; mu= 11.1738+/- 0.057
mean_var=110.8758+/-22.080, 0's: 0 Z-trim(107.2): 19 B-trim: 0 in 0/52
Lambda= 0.121802
statistics sampled from 9396 (9405) to 9396 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.658), E-opt: 0.2 (0.289), width: 16
Scan time: 2.640
The best scores are: opt bits E(32554)
CCDS7109.1 NMT2 gene_id:9397|Hs108|chr10 ( 498) 3343 598.5 5.4e-171
CCDS76284.1 NMT2 gene_id:9397|Hs108|chr10 ( 485) 2814 505.6 5.1e-143
CCDS11494.1 NMT1 gene_id:4836|Hs108|chr17 ( 496) 2450 441.6 9.3e-124
>>CCDS7109.1 NMT2 gene_id:9397|Hs108|chr10 (498 aa)
initn: 3343 init1: 3343 opt: 3343 Z-score: 3183.4 bits: 598.5 E(32554): 5.4e-171
Smith-Waterman score: 3343; 99.8% identity (100.0% similar) in 498 aa overlap (1-498:1-498)
10 20 30 40 50 60
pF1KE4 MAEDSESAASQQSLELDDQDTCGIDGDNEEETEHAKGSPGGYLGAKKKKKKQKRKKEKPN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 MAEDSESAASQQSLELDDQDTCGIDGDNEEETEHAKGSPGGYLGAKKKKKKQKRKKEKPN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 SGGTKSDSASDSQEIKIQQPSKNPSVPMQKLQDIQRAMELLSACQGPARNIDEAAKHRYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 SGGTKSDSASDSQEIKIQQPSKNPSVPMQKLQDIQRAMELLSACQGPARNIDEAAKHRYQ
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 FWDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEVLKELYTLLNE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 FWDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEVLKELYTLLNE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 NYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 NYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 VKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRYWH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 VKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRYWH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 RSLNPKKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKSVRELINTYLK
:::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 RSLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKSVRELINTYLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 QFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVMHHPAHKSLKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 QFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVMHHPAHKSLKA
370 380 390 400 410 420
430 440 450 460 470 480
pF1KE4 AYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS71 AYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYL
430 440 450 460 470 480
490
pF1KE4 YNWRCPGTDSEKVGLVLQ
::::::::::::::::::
CCDS71 YNWRCPGTDSEKVGLVLQ
490
>>CCDS76284.1 NMT2 gene_id:9397|Hs108|chr10 (485 aa)
initn: 2809 init1: 2809 opt: 2814 Z-score: 2681.2 bits: 505.6 E(32554): 5.1e-143
Smith-Waterman score: 2820; 90.6% identity (95.1% similar) in 467 aa overlap (46-498:21-485)
20 30 40 50 60
pF1KE4 LDDQDTCGIDGDNEEETEHAKGSPGGYLGAKKKKKKQKRKKEKPNS--------------
:......::... :..
CCDS76 MRRRRSTPKEVLEGIWEPKRKRRNRREKRRNQIPEAPSQTRHLIPRRLKF
10 20 30 40 50
70 80 90 100 110 120
pF1KE4 GGTKSDSASDSQEIKIQQPSKNPSVPMQKLQDIQRAMELLSACQGPARNIDEAAKHRYQF
.. .. . : :. .. .:: :::::::::::::::::::::::::::::::::::::::
CCDS76 SSLRNTTPSGSR-FQREQP-WNPSVPMQKLQDIQRAMELLSACQGPARNIDEAAKHRYQF
60 70 80 90 100
130 140 150 160 170 180
pF1KE4 WDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEVLKELYTLLNEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 WDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEVLKELYTLLNEN
110 120 130 140 150 160
190 200 210 220 230 240
pF1KE4 YVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISAIPANIRIYDSV
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 KKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRYWHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 KKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLPKPIATCRYWHR
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 SLNPKKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKSVRELINTYLKQ
::::.:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SLNPRKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKSVRELINTYLKQ
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE4 FHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVMHHPAHKSLKAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 FHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVMHHPAHKSLKAA
350 360 370 380 390 400
430 440 450 460 470 480
pF1KE4 YSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 YSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFGIGDGNLQYYLY
410 420 430 440 450 460
490
pF1KE4 NWRCPGTDSEKVGLVLQ
:::::::::::::::::
CCDS76 NWRCPGTDSEKVGLVLQ
470 480
>>CCDS11494.1 NMT1 gene_id:4836|Hs108|chr17 (496 aa)
initn: 2569 init1: 2383 opt: 2450 Z-score: 2335.3 bits: 441.6 E(32554): 9.3e-124
Smith-Waterman score: 2515; 73.0% identity (88.6% similar) in 508 aa overlap (1-498:1-496)
10 20 30 40 50
pF1KE4 MAEDSESAASQQSLEL--------DDQDTCGIDGDNEEETEHAKG--SPGGYLGAKKKKK
::..::.:.. . : . .. :. : .:::.. . .: ::.. :::::::
CCDS11 MADESETAVKPPAPPLPQMMEGNGNGHEHCS-DCENEEDNSYNRGGLSPANDTGAKKKKK
10 20 30 40 50
60 70 80 90 100 110
pF1KE4 KQKRKKEKPNSGGTKSDSASDSQEIKIQQPSKNPSVPMQKLQDIQRAMELLSACQGPARN
:::.:::: :...:::.: :: : :.: ...:.::.:.::.:. ::::..
CCDS11 KQKKKKEK----GSETDSAQD-------QPVKMNSLPAERIQEIQKAIELFSVGQGPAKT
60 70 80 90 100
120 130 140 150 160 170
pF1KE4 IDEAAKHRYQFWDTQPVPKLDEVITSHGAIEPDKDNVRQEPYSLPQGFMWDTLDLSDAEV
..::.:. :::::::::::: ::...:: .::::::.:::::.::::: ::.:::.: :
CCDS11 MEEASKRSYQFWDTQPVPKLGEVVNTHGPVEPDKDNIRQEPYTLPQGFTWDALDLGDRGV
110 120 130 140 150 160
180 190 200 210 220 230
pF1KE4 LKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLLQWHCGVRVSSNKKLVGFISA
::::::::::::::::::::::::::::::::::::::: :::::::: :..::::::::
CCDS11 LKELYTLLNENYVEDDDNMFRFDYSPEFLLWALRPPGWLPQWHCGVRVVSSRKLVGFISA
170 180 190 200 210 220
240 250 260 270 280 290
pF1KE4 IPANIRIYDSVKKMVEINFLCVHKKLRSKRVAPVLIREITRRVNLEGIFQAVYTAGVVLP
:::::.:::. ::::::::::::::::::::::::::::::::.::::::::::::::::
CCDS11 IPANIHIYDTEKKMVEINFLCVHKKLRSKRVAPVLIREITRRVHLEGIFQAVYTAGVVLP
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE4 KPIATCRYWHRSLNPKKLVEVKFSHLSRNMTLQRTMKLYRLPDVTKTSGLRPMEPKDIKS
::..:::::::::::.::.::::::::::::.::::::::::.. ::.:::::: :::
CCDS11 KPVGTCRYWHRSLNPRKLIEVKFSHLSRNMTMQRTMKLYRLPETPKTAGLRPMETKDIPV
290 300 310 320 330 340
360 370 380 390 400 410
pF1KE4 VRELINTYLKQFHLAPVMDEEEVAHWFLPREHIIDTFVVESPNGKLTDFLSFYTLPSTVM
:..:.. :::::::.:::..::: ::: :.:.::::::::. ::..::::::::::::.:
CCDS11 VHQLLTRYLKQFHLTPVMSQEEVEHWFYPQENIIDTFVVENANGEVTDFLSFYTLPSTIM
350 360 370 380 390 400
420 430 440 450 460 470
pF1KE4 HHPAHKSLKAAYSFYNIHTETPLLDLMSDALILAKSKGFDVFNALDLMENKTFLEKLKFG
.::.::::::::::::.::.:::::::::::.::: ::::::::::::::::::::::::
CCDS11 NHPTHKSLKAAYSFYNVHTQTPLLDLMSDALVLAKMKGFDVFNALDLMENKTFLEKLKFG
410 420 430 440 450 460
480 490
pF1KE4 IGDGNLQYYLYNWRCPGTDSEKVGLVLQ
:::::::::::::.::. .::::::::
CCDS11 IGDGNLQYYLYNWKCPSMGAEKVGLVLQ
470 480 490
498 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:35:46 2016 done: Sat Nov 5 22:35:46 2016
Total Scan time: 2.640 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]