FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4477, 495 aa
  1>>>pF1KE4477 495 - 495 aa - 495 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0239+/-0.000803; mu= 14.4660+/- 0.048
 mean_var=79.9778+/-15.915, 0's: 0 Z-trim(109.1): 24  B-trim: 562 in 1/49
 Lambda= 0.143413
 statistics sampled from 10618 (10625) to 10618 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.694), E-opt: 0.2 (0.326), width:  16
 Scan time:  3.130

The best scores are:                                      opt bits E(32554)
CCDS12691.1 FKRP gene_id:79147|Hs108|chr19         ( 495) 3361 705.0 4.7e-203


>>CCDS12691.1 FKRP gene_id:79147|Hs108|chr19              (495 aa)
 initn: 3361 init1: 3361 opt: 3361  Z-score: 3759.0  bits: 705.0 E(32554): 4.7e-203
Smith-Waterman score: 3361; 100.0% identity (100.0% similar) in 495 aa overlap (1-495:1-495)

               10        20        30        40        50        60
pF1KE4 MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MRLTRCQAALAAAITLNLLVLFYVSWLQHQPRNSRARGPRRASAAGPRVTVLVREFEAFD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 NAVPELVDSFLQQDPAQPVVVAADTLPYPPLALPRIPNVRLALLQPALDRPAAASRPETY
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VATEFVALVPDGARAEAPGLLERMVEALRAGSARLVAAPVATANPARCLALNVSLREWTA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RYGAAPAAPRCDALDGDAVVLLRARDLFNLSAPLARPVGTSLFLQTALRGWAVQLLDLTF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AAARQPPLATAHARWKAEREGRARRAALLRALGIRLVSWEGGRLEWFGCNKETTRCFGTV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 VGDTPAYLYEERWTPPCCLRALRETARYVVGVLEAAGVRYWLEGGSLLGAARHGDIIPWD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YDVDLGIYLEDVGNCEQLRGAEAGSVVDERGFVWEKAVEGDFFRVQYSESNHLHVDLWPF
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KE4 YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 YPRNGVMTKDTWLDHRQDVEFPEHFLQPLVPLPFAGFVAQAPNNYRRFLELKFGPGVIEN
              430       440       450       460       470       480

              490     
pF1KE4 PQYPNPALLSLTGSG
       :::::::::::::::
CCDS12 PQYPNPALLSLTGSG
              490     




495 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:27:33 2016 done: Sun Nov  6 00:27:33 2016
 Total Scan time:  3.130 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]