FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4448, 463 aa
  1>>>pF1KE4448 463 - 463 aa - 463 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.0142+/-0.000808; mu= 14.3355+/- 0.049
 mean_var=74.1451+/-15.501, 0's: 0 Z-trim(108.4): 6  B-trim: 438 in 1/49
 Lambda= 0.148947
 statistics sampled from 10215 (10219) to 10215 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.686), E-opt: 0.2 (0.314), width:  16
 Scan time:  3.060

The best scores are:                                      opt bits E(32554)
CCDS1224.1 NDUFS2 gene_id:4720|Hs108|chr1          ( 463) 3183 693.2 1.5e-199
CCDS53404.1 NDUFS2 gene_id:4720|Hs108|chr1         ( 457) 3126 680.9 7.2e-196


>>CCDS1224.1 NDUFS2 gene_id:4720|Hs108|chr1               (463 aa)
 initn: 3183 init1: 3183 opt: 3183  Z-score: 3696.1  bits: 693.2 E(32554): 1.5e-199
Smith-Waterman score: 3183; 100.0% identity (100.0% similar) in 463 aa overlap (1-463:1-463)

               10        20        30        40        50        60
pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
              370       380       390       400       410       420

              430       440       450       460   
pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
       :::::::::::::::::::::::::::::::::::::::::::
CCDS12 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
              430       440       450       460   

>>CCDS53404.1 NDUFS2 gene_id:4720|Hs108|chr1              (457 aa)
 initn: 3126 init1: 3126 opt: 3126  Z-score: 3630.0  bits: 680.9 E(32554): 7.2e-196
Smith-Waterman score: 3126; 99.6% identity (99.8% similar) in 457 aa overlap (1-457:1-457)

               10        20        30        40        50        60
pF1KE4 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MAALRALCGFRGVAAQVLRPGAGVRLPIQPSRGVRQWQPDVEWAQQFGGAVMYPSKETAH
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 WKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDD
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 AKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPY
              370       380       390       400       410       420

              430       440       450       460   
pF1KE4 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR
       :::::::::::::::::::::::::::::::::. ::      
CCDS53 RCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTRPIV      
              430       440       450             




463 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:35:28 2016 done: Sun Nov  6 00:35:29 2016
 Total Scan time:  3.060 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]