Result of FASTA (omim) for
pFN21AE4432
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4432, 451 aa
1>>>pF1KE4432 451 - 451 aa - 451 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6309+/-0.000443; mu= 15.8433+/- 0.027
mean_var=70.1609+/-14.197, 0's: 0 Z-trim(111.0): 67 B-trim: 228 in 1/49
Lambda= 0.153118
statistics sampled from 19439 (19506) to 19439 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.229), width: 16
Scan time: 8.370
The best scores are: opt bits E(85289)
NP_001061 (OMIM: 191135,615412) tubulin gamma-1 ch ( 451) 2999 672.0 9e-193
NP_057521 (OMIM: 605785) tubulin gamma-2 chain iso ( 451) 2947 660.5 2.6e-189
NP_001307438 (OMIM: 605785) tubulin gamma-2 chain ( 460) 2037 459.5 8.5e-129
XP_011522916 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 1856 419.4 6.4e-117
XP_016879942 (OMIM: 605785) PREDICTED: tubulin gam ( 298) 1856 419.4 6.4e-117
XP_016879946 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1742 394.2 2.3e-109
XP_016879943 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1742 394.2 2.3e-109
XP_016879945 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1742 394.2 2.3e-109
XP_016879944 (OMIM: 605785) PREDICTED: tubulin gam ( 274) 1742 394.2 2.3e-109
NP_006079 (OMIM: 602660) tubulin beta-4B chain [Ho ( 445) 1013 233.3 1e-60
NP_821080 (OMIM: 610031,612850) tubulin beta-2B ch ( 445) 1008 232.2 2.2e-60
NP_817124 (OMIM: 616768,616780) tubulin beta-8 cha ( 444) 1007 231.9 2.6e-60
NP_821133 (OMIM: 156610,191130,615771) tubulin bet ( 444) 1007 231.9 2.6e-60
NP_001060 (OMIM: 615101,615763) tubulin beta-2A ch ( 445) 1006 231.7 3e-60
NP_006078 (OMIM: 602662) tubulin beta-4A chain iso ( 444) 1003 231.1 4.8e-60
NP_001276058 (OMIM: 602662) tubulin beta-4A chain ( 444) 1003 231.1 4.8e-60
NP_001290453 (OMIM: 615103) tubulin beta-6 chain i ( 446) 1003 231.1 4.8e-60
NP_115914 (OMIM: 615103) tubulin beta-6 chain isof ( 446) 1003 231.1 4.8e-60
NP_001276056 (OMIM: 602662) tubulin beta-4A chain ( 489) 1003 231.1 5.2e-60
NP_001276052 (OMIM: 602662) tubulin beta-4A chain ( 495) 1003 231.1 5.2e-60
NP_006077 (OMIM: 600638,602661,614039) tubulin bet ( 450) 997 229.7 1.2e-59
NP_110400 (OMIM: 612901,613112) tubulin beta-1 cha ( 451) 980 226.0 1.6e-58
NP_001280141 (OMIM: 156610,191130,615771) tubulin ( 464) 920 212.7 1.6e-54
XP_016883574 (OMIM: 612901,613112) PREDICTED: tubu ( 429) 866 200.8 6e-51
NP_001280143 (OMIM: 156610,191130,615771) tubulin ( 400) 846 196.4 1.2e-49
NP_005991 (OMIM: 191110,616208) tubulin alpha-4A c ( 448) 829 192.6 1.8e-48
NP_006073 (OMIM: 602530) tubulin alpha-1B chain [H ( 451) 820 190.6 7.1e-48
NP_001257328 (OMIM: 602529,611603) tubulin alpha-1 ( 451) 817 190.0 1.1e-47
NP_006000 (OMIM: 602529,611603) tubulin alpha-1A c ( 451) 817 190.0 1.1e-47
NP_005992 (OMIM: 602528) tubulin alpha-3C/D chain ( 450) 815 189.5 1.5e-47
NP_061816 (OMIM: 605742,613180) tubulin alpha-8 ch ( 449) 799 186.0 1.8e-46
XP_011517761 (OMIM: 616768,616780) PREDICTED: tubu ( 372) 794 184.9 3.2e-46
NP_001265481 (OMIM: 191110,616208) tubulin alpha-4 ( 433) 782 182.2 2.3e-45
NP_001290456 (OMIM: 615103) tubulin beta-6 chain i ( 374) 777 181.1 4.4e-45
NP_001280145 (OMIM: 156610,191130,615771) tubulin ( 372) 774 180.4 6.9e-45
NP_001280144 (OMIM: 156610,191130,615771) tubulin ( 372) 774 180.4 6.9e-45
NP_001184110 (OMIM: 600638,602661,614039) tubulin ( 378) 770 179.6 1.3e-44
NP_001276059 (OMIM: 602662) tubulin beta-4A chain ( 372) 769 179.3 1.5e-44
NP_001276060 (OMIM: 602662) tubulin beta-4A chain ( 372) 769 179.3 1.5e-44
NP_001290455 (OMIM: 615103) tubulin beta-6 chain i ( 409) 748 174.7 4e-43
NP_001297244 (OMIM: 615101,615763) tubulin beta-2A ( 360) 741 173.1 1.1e-42
NP_001290457 (OMIM: 615103) tubulin beta-6 chain i ( 381) 740 172.9 1.3e-42
NP_001257329 (OMIM: 602529,611603) tubulin alpha-1 ( 416) 711 166.5 1.2e-40
XP_016871682 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 694 162.7 1.3e-39
XP_016871681 (OMIM: 616768,616780) PREDICTED: tubu ( 332) 694 162.7 1.3e-39
NP_001180343 (OMIM: 605742,613180) tubulin alpha-8 ( 383) 645 151.9 2.7e-36
NP_001290458 (OMIM: 615103) tubulin beta-6 chain i ( 300) 559 132.9 1.1e-30
NP_001290459 (OMIM: 615103) tubulin beta-6 chain i ( 300) 559 132.9 1.1e-30
XP_016880205 (OMIM: 607344) PREDICTED: tubulin del ( 375) 543 129.4 1.6e-29
NP_001180539 (OMIM: 607344) tubulin delta chain is ( 396) 543 129.4 1.7e-29
>>NP_001061 (OMIM: 191135,615412) tubulin gamma-1 chain (451 aa)
initn: 2999 init1: 2999 opt: 2999 Z-score: 3581.9 bits: 672.0 E(85289): 9e-193
Smith-Waterman score: 2999; 100.0% identity (100.0% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KE4 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE
370 380 390 400 410 420
430 440 450
pF1KE4 MDTSREIVQQLIDEYHAATRPDYISWGTQEQ
:::::::::::::::::::::::::::::::
NP_001 MDTSREIVQQLIDEYHAATRPDYISWGTQEQ
430 440 450
>>NP_057521 (OMIM: 605785) tubulin gamma-2 chain isoform (451 aa)
initn: 2947 init1: 2947 opt: 2947 Z-score: 3519.8 bits: 660.5 E(85289): 2.6e-189
Smith-Waterman score: 2947; 97.8% identity (99.3% similar) in 451 aa overlap (1-451:1-451)
10 20 30 40 50 60
pF1KE4 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSD
::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::::
NP_057 IIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPYQDEMSD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAST
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 TTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 KNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVAL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 SRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDE
::::::::::::::::::::::::::::: .:.:.::::::.::::::::::::::::::
NP_057 SRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDE
370 380 390 400 410 420
430 440 450
pF1KE4 MDTSREIVQQLIDEYHAATRPDYISWGTQEQ
:: :::.::.:::::::::.:::::::::::
NP_057 MDRSREVVQELIDEYHAATQPDYISWGTQEQ
430 440 450
>>NP_001307438 (OMIM: 605785) tubulin gamma-2 chain isof (460 aa)
initn: 2037 init1: 2037 opt: 2037 Z-score: 2433.3 bits: 459.5 E(85289): 8.5e-129
Smith-Waterman score: 2919; 95.9% identity (97.4% similar) in 460 aa overlap (1-451:1-460)
10 20 30 40 50 60
pF1KE4 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFD
70 80 90 100 110 120
130 140 150 160 170
pF1KE4 IIDREADGSDSLE---------GFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSV
::::::::::::: ::::::::::::::::::::::::::::::::::::::
NP_001 IIDREADGSDSLELQNSSRVIKGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSV
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 FPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQL
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPYQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQL
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 VSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVL
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE4 DVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPW
310 320 330 340 350 360
360 370 380 390 400 410
pF1KE4 GPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKE
:::::::::::::::::::::::::::::::::::::: .:.:.::::::.:::::::::
NP_001 GPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKE
370 380 390 400 410 420
420 430 440 450
pF1KE4 DMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQ
::::::::::: :::.::.:::::::::.:::::::::::
NP_001 DMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWGTQEQ
430 440 450 460
>>XP_011522916 (OMIM: 605785) PREDICTED: tubulin gamma-2 (298 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 2220.1 bits: 419.4 E(85289): 6.4e-117
Smith-Waterman score: 1856; 96.6% identity (99.0% similar) in 292 aa overlap (160-451:7-298)
130 140 150 160 170 180
pF1KE4 DSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSL
:::::::::::::: :::::::::::::::
XP_011 MEVTVWRYPKKLVQTYSVFPYQDEMSDVVVQPYNSL
10 20 30
190 200 210 220 230 240
pF1KE4 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE4 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE4 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE4 AHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQ
:::::::::::::::::::: .:.:.::::::.:::::::::::::::::::: :::.::
XP_011 AHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQ
220 230 240 250 260 270
430 440 450
pF1KE4 QLIDEYHAATRPDYISWGTQEQ
.:::::::::.:::::::::::
XP_011 ELIDEYHAATQPDYISWGTQEQ
280 290
>>XP_016879942 (OMIM: 605785) PREDICTED: tubulin gamma-2 (298 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 2220.1 bits: 419.4 E(85289): 6.4e-117
Smith-Waterman score: 1856; 96.6% identity (99.0% similar) in 292 aa overlap (160-451:7-298)
130 140 150 160 170 180
pF1KE4 DSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSL
:::::::::::::: :::::::::::::::
XP_016 MEVTVWRYPKKLVQTYSVFPYQDEMSDVVVQPYNSL
10 20 30
190 200 210 220 230 240
pF1KE4 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYM
40 50 60 70 80 90
250 260 270 280 290 300
pF1KE4 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGR
100 110 120 130 140 150
310 320 330 340 350 360
pF1KE4 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPS
160 170 180 190 200 210
370 380 390 400 410 420
pF1KE4 AHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQ
:::::::::::::::::::: .:.:.::::::.:::::::::::::::::::: :::.::
XP_016 AHRVSGLMMANHTSISSLFESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQ
220 230 240 250 260 270
430 440 450
pF1KE4 QLIDEYHAATRPDYISWGTQEQ
.:::::::::.:::::::::::
XP_016 ELIDEYHAATQPDYISWGTQEQ
280 290
>>XP_016879946 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1742 init1: 1742 opt: 1742 Z-score: 2084.6 bits: 394.2 E(85289): 2.3e-109
Smith-Waterman score: 1742; 96.7% identity (99.3% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KE4 GLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KE4 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE4 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE4 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE4 FERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWG
:: .:.:.::::::.:::::::::::::::::::: :::.::.:::::::::.:::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KE4 TQEQ
::::
XP_016 TQEQ
>>XP_016879943 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1742 init1: 1742 opt: 1742 Z-score: 2084.6 bits: 394.2 E(85289): 2.3e-109
Smith-Waterman score: 1742; 96.7% identity (99.3% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KE4 GLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KE4 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE4 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE4 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE4 FERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWG
:: .:.:.::::::.:::::::::::::::::::: :::.::.:::::::::.:::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KE4 TQEQ
::::
XP_016 TQEQ
>>XP_016879945 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1742 init1: 1742 opt: 1742 Z-score: 2084.6 bits: 394.2 E(85289): 2.3e-109
Smith-Waterman score: 1742; 96.7% identity (99.3% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KE4 GLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KE4 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE4 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE4 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE4 FERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWG
:: .:.:.::::::.:::::::::::::::::::: :::.::.:::::::::.:::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KE4 TQEQ
::::
XP_016 TQEQ
>>XP_016879944 (OMIM: 605785) PREDICTED: tubulin gamma-2 (274 aa)
initn: 1742 init1: 1742 opt: 1742 Z-score: 2084.6 bits: 394.2 E(85289): 2.3e-109
Smith-Waterman score: 1742; 96.7% identity (99.3% similar) in 274 aa overlap (178-451:1-274)
150 160 170 180 190 200
pF1KE4 GLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCVVVLDN
::::::::::::::::::::::::::::::
XP_016 MSDVVVQPYNSLLTLKRLTQNADCVVVLDN
10 20 30
210 220 230 240 250 260
pF1KE4 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 TALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLH
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE4 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAILNIIQGE
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE4 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSL
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE4 FERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWG
:: .:.:.::::::.:::::::::::::::::::: :::.::.:::::::::.:::::::
XP_016 FESSCQQFDKLRKRDAFLEQFRKEDMFKDNFDEMDRSREVVQELIDEYHAATQPDYISWG
220 230 240 250 260 270
450
pF1KE4 TQEQ
::::
XP_016 TQEQ
>>NP_006079 (OMIM: 602660) tubulin beta-4B chain [Homo s (445 aa)
initn: 599 init1: 315 opt: 1013 Z-score: 1211.0 bits: 233.3 E(85289): 1e-60
Smith-Waterman score: 1015; 34.9% identity (72.6% similar) in 435 aa overlap (3-436:2-423)
10 20 30 40 50 60
pF1KE4 MPREIITLQLGQCGNQIGFEFWKQLCAEHGISPEGIVEEFATEGTDRKDVFFYQADDEHY
:::. :: :::::::: .::. . ::::.: : . . .: .:.. .: .:
NP_006 MREIVHLQAGQCGNQIGAKFWEVISDEHGIDPTGTYHGDSDLQLERINVYYNEATGGKY
10 20 30 40 50
70 80 90 100 110
pF1KE4 IPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASG-FSQGEKIHEDIF
.:::::.:::: .. :. ..:..... :.:. ... .:::::::.: ...: .. ....
NP_006 VPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KE4 DIIDREADGSDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMS
:.. .::.. : :.:: : ::..::::::.:. :. .. ..:: ....:.:: :. ..:
NP_006 DVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVS
120 130 140 150 160 170
180 190 200 210 220 230
pF1KE4 DVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSAS
:.::.:::. :....:..:.: . .:: :: : :.. .:.....:.:::. ::.
NP_006 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 TTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQ
:: ::.:: .: :: : ....: :::::.: :..:::. : . : :: .. .....
NP_006 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFD
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 PKNVMVSTGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVA
::.:.. : . .. :... ...:... .: ... ..... . :. : : ....:
NP_006 AKNMMAAC--DPRHGR-YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTA
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE4 LSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFD
. : : . ..:. ...: :.:. ::.: .:. . .:.:::. . : : . .:
NP_006 VC-DIP--PRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFT
360 370 380 390 400
420 430 440 450
pF1KE4 EMDTSREIVQQLIDEYHAATRPDYISWGTQEQ
: ... ...:..::.
NP_006 EAESN---MNDLVSEYQQYQDATAEEEGEFEEEAEEEVA
410 420 430 440
451 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 00:39:08 2016 done: Sun Nov 6 00:39:09 2016
Total Scan time: 8.370 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]