Result of FASTA (ccds) for
pFN21AE4429
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4429, 445 aa
1>>>pF1KE4429 445 - 445 aa - 445 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3684+/-0.000778; mu= 16.8738+/- 0.047
mean_var=62.5789+/-12.571, 0's: 0 Z-trim(107.3): 18 B-trim: 2 in 1/49
Lambda= 0.162129
statistics sampled from 9472 (9488) to 9472 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.67), E-opt: 0.2 (0.291), width: 16
Scan time: 3.170
The best scores are: opt bits E(32554)
CCDS11341.1 STARD3 gene_id:10948|Hs108|chr17 ( 445) 2904 687.9 5.5e-198
CCDS54117.1 STARD3 gene_id:10948|Hs108|chr17 ( 445) 2464 584.9 5.3e-167
CCDS54118.1 STARD3 gene_id:10948|Hs108|chr17 ( 427) 2001 476.6 2e-134
CCDS5455.1 STARD3NL gene_id:83930|Hs108|chr7 ( 234) 848 206.8 1.9e-53
CCDS6102.1 STAR gene_id:6770|Hs108|chr8 ( 285) 492 123.6 2.6e-28
CCDS11955.1 STARD6 gene_id:147323|Hs108|chr18 ( 220) 281 74.2 1.5e-13
CCDS10318.1 STARD5 gene_id:80765|Hs108|chr15 ( 213) 246 66.0 4.2e-11
>>CCDS11341.1 STARD3 gene_id:10948|Hs108|chr17 (445 aa)
initn: 2904 init1: 2904 opt: 2904 Z-score: 3667.9 bits: 687.9 E(32554): 5.5e-198
Smith-Waterman score: 2904; 99.8% identity (100.0% similar) in 445 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KE4 MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 LLFISLLWIIELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLQLRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS11 LLFISLLWIIELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLRLRH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 WWVIAVTTLVSSAFLIVKVILSELLSKGAFGYLLPIVSFVLAWLETWFLDFKVLPQEAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WWVIAVTTLVSSAFLIVKVILSELLSKGAFGYLLPIVSFVLAWLETWFLDFKVLPQEAEE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 ERWYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGKKSFSAQEREYIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ERWYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGKKSFSAQEREYIR
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 QGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 QGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEV
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 ILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 ILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY
310 320 330 340 350 360
370 380 390 400 410 420
pF1KE4 LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIH
370 380 390 400 410 420
430 440
pF1KE4 QSLAATMFEFAFHLRQRISELGARA
:::::::::::::::::::::::::
CCDS11 QSLAATMFEFAFHLRQRISELGARA
430 440
>>CCDS54117.1 STARD3 gene_id:10948|Hs108|chr17 (445 aa)
initn: 2398 init1: 2398 opt: 2464 Z-score: 3111.7 bits: 584.9 E(32554): 5.3e-167
Smith-Waterman score: 2464; 86.8% identity (89.2% similar) in 455 aa overlap (1-445:1-445)
10 20 30 40 50 60
pF1KE4 MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 LLFISLLWIIELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLQLRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS54 LLFISLLWIIELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLRLRH
70 80 90 100 110 120
130 140 150 160 170
pF1KE4 W---WVIAVTTLVSSAFLIVKVILSELLSKGAFGYLLPIVSFVLAWLETWF---LDFKVL
: : . ..: :. : : .: :.: : : : :
CCDS54 WSRRWCPVHSSLSRSSSL----------SCSAKGHLATCSPSSLLSSPGWRPGSLTSKSY
130 140 150 160 170
180 190 200 210 220 230
pF1KE4 PQEAEEER----WYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGKKS
:.. .. :::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 PRKLKRSDSAPPGYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGKKS
180 190 200 210 220 230
240 250 260 270 280 290
pF1KE4 FSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 FSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLP
240 250 260 270 280 290
300 310 320 330 340 350
pF1KE4 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNV
300 310 320 330 340 350
360 370 380 390 400 410
pF1KE4 RRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 RRIERRRDRYLSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDL
360 370 380 390 400 410
420 430 440
pF1KE4 KGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA
:::::::::::::::::::::::::::::::::::
CCDS54 KGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA
420 430 440
>>CCDS54118.1 STARD3 gene_id:10948|Hs108|chr17 (427 aa)
initn: 2001 init1: 2001 opt: 2001 Z-score: 2526.7 bits: 476.6 E(32554): 2e-134
Smith-Waterman score: 2763; 95.7% identity (96.0% similar) in 445 aa overlap (1-445:1-427)
10 20 30 40 50 60
pF1KE4 MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 MSKLPRELTRDLERSLPAVASLGSSLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVTFD
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 LLFISLLWIIELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLQLRH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS54 LLFISLLWIIELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLRLRH
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 WWVIAVTTLVSSAFLIVKVILSELLSKGAFGYLLPIVSFVLAWLETWFLDFKVLPQEAEE
::::: :::::::::::::::::::::::::::::::::::::
CCDS54 WWVIA------------------LLSKGAFGYLLPIVSFVLAWLETWFLDFKVLPQEAEE
130 140 150 160
190 200 210 220 230 240
pF1KE4 ERWYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGKKSFSAQEREYIR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ERWYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGKKSFSAQEREYIR
170 180 190 200 210 220
250 260 270 280 290 300
pF1KE4 QGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 QGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEV
230 240 250 260 270 280
310 320 330 340 350 360
pF1KE4 ILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 ILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRY
290 300 310 320 330 340
370 380 390 400 410 420
pF1KE4 LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIH
350 360 370 380 390 400
430 440
pF1KE4 QSLAATMFEFAFHLRQRISELGARA
:::::::::::::::::::::::::
CCDS54 QSLAATMFEFAFHLRQRISELGARA
410 420
>>CCDS5455.1 STARD3NL gene_id:83930|Hs108|chr7 (234 aa)
initn: 809 init1: 712 opt: 848 Z-score: 1073.2 bits: 206.8 E(32554): 1.9e-53
Smith-Waterman score: 848; 57.6% identity (82.7% similar) in 231 aa overlap (1-229:1-229)
10 20 30 40 50
pF1KE4 MSKLPRELTRDLERSLPAVASLGS--SLSHSQSLSSHLLPPPEKRRAISDVRRTFCLFVT
:..::... : : . ::: . :.. .: .. .....:::::::::::::
CCDS54 MNHLPEDMENALTGSQSSHASLRNIHSINPTQLMARIESYEGREKKGISDVRRTFCLFVT
10 20 30 40 50 60
60 70 80 90 100 110
pF1KE4 FDLLFISLLWIIELNTNTGIRKNLEQEIIQYNFKTSFFDIFVLAFFRFSGLLLGYAVLQL
:::::..::::::::.: ::...::.:..::.. .:.::::.:: :::. :.:.::: .:
CCDS54 FDLLFVTLLWIIELNVNGGIENTLEKEVMQYDYYSSYFDIFLLAVFRFKVLILAYAVCRL
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 RHWWVIAVTTLVSSAFLIVKVILSELLSKGAFGYLLPIVSFVLAWLETWFLDFKVLPQEA
::::.::.:: :.::::..:::::.:.:.:::::.:::.::.:::.::::::::::::::
CCDS54 RHWWAIALTTAVTSAFLLAKVILSKLFSQGAFGYVLPIISFILAWIETWFLDFKVLPQEA
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 EEERWYLAAQVAVARGPLLFSGALSEGQFYSPPESFAGSDNESDEEVAGKKSFSAQEREY
::: : .: : :. :. :.::.::::::::: :::. :..:. ..:
CCDS54 EEENRLLIVQDASERAALI-PGGLSDGQFYSPPESEAGSE-EAEEKQDSEKPLLEL
190 200 210 220 230
240 250 260 270 280 290
pF1KE4 IRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQ
>>CCDS6102.1 STAR gene_id:6770|Hs108|chr8 (285 aa)
initn: 514 init1: 485 opt: 492 Z-score: 621.9 bits: 123.6 E(32554): 2.6e-28
Smith-Waterman score: 492; 37.5% identity (70.2% similar) in 208 aa overlap (231-438:68-275)
210 220 230 240 250 260
pF1KE4 ALSEGQFYSPPESFAGSDNESDEEVAGKKSFSAQEREYIRQGKEATAVVDQILAQEENWK
.: :: :..::.:: . ::...:.::
CCDS61 RALGGPTPSTWINQVRRRSSLLGSRLEETLYSDQELAYLQQGEEAMQKALGILSNQEGWK
40 50 60 70 80 90
270 280 290 300 310 320
pF1KE4 FEKNNEYGDTVYTIEVPFHGKTFILKTFLPCPAELVYQEVILQPERMVLWNKTVTACQIL
:.... :: :.. :: ::.: :.. . : : .:.:.. . : : :: .: ..:
CCDS61 KESQQDNGDKVMSKVVPDVGKVFRLEVVVDQPMERLYEELVERMEAMGEWNPNVKEIKVL
100 110 120 130 140 150
330 340 350 360 370 380
pF1KE4 QRVEDNTLISYDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIATSHSAKPPTHKYVR
:.. .:.:.....: :::..:.:::::.:: .:: . . .:.::. . : . .:
CCDS61 QKIGKDTFITHELAAEAAGNLVGPRDFVSVRCAKRRGSTCVLAGMATDFGNMPEQKGVIR
160 170 180 190 200 210
390 400 410 420 430 440
pF1KE4 GENGPGGFIVLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISE
.:.:: ... :..: ..:.:. :::: ::. .:.: :. :. .:: :::.:.
CCDS61 AEHGPTCMVLHPLAGSPSKTKLTWLLSIDLKGWLPKSIINQVLSQTQVDFANHLRKRLES
220 230 240 250 260 270
pF1KE4 LGARA
CCDS61 HPASEARC
280
>>CCDS11955.1 STARD6 gene_id:147323|Hs108|chr18 (220 aa)
initn: 183 init1: 86 opt: 281 Z-score: 356.9 bits: 74.2 E(32554): 1.5e-13
Smith-Waterman score: 281; 24.2% identity (62.1% similar) in 182 aa overlap (259-438:24-203)
230 240 250 260 270 280
pF1KE4 KSFSAQEREYIRQGKEATAVVDQILAQEENWKFEKNNEYGDTVYTIEVPFHGKTFILKTF
:: :... . :::. . .. .
CCDS11 MDFKAIAQQTAQEVLGYNRDTSGWKVVKTSKKITVSSKASRKFHGNLYRVEGI
10 20 30 40 50
290 300 310 320 330 340
pF1KE4 LP-CPAELVYQEVILQPERMVLWNKTVTACQILQRVEDNTLISYDVSAGAAGGVVSPRDF
.: ::.: .. . : . :.:.. . ....:....:.: . .. . : : .:::::
CCDS11 IPESPAKL--SDFLYQTGDRITWDKSLQVYNMVHRIDSDTFICHTITQSFAVGSISPRDF
60 70 80 90 100 110
350 360 370 380 390 400
pF1KE4 VNVRRIERRRDRY-LSSGIATSHSAKPPTHKYVRGENGPGGFIVLKSASNPRVCTFVWIL
... :.: . . . :. ... ::. .:.:: : : ::. :: .: ..
CCDS11 IDLVYIKRYEGNMNIISSKSVDFPEYPPSSNYIRGYNHPCGFVCSPMEENPAYSKLVMFV
120 130 140 150 160 170
410 420 430 440
pF1KE4 NTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA
.:...:.: .:.... ... .: .. .. :
CCDS11 QTEMRGKLSPSIIEKTMPSNLVNFILNAKDGIKAHRTPSRRGFHHNSHS
180 190 200 210 220
>>CCDS10318.1 STARD5 gene_id:80765|Hs108|chr15 (213 aa)
initn: 218 init1: 133 opt: 246 Z-score: 312.9 bits: 66.0 E(32554): 4.2e-11
Smith-Waterman score: 246; 25.7% identity (59.9% similar) in 202 aa overlap (247-441:12-211)
220 230 240 250 260 270
pF1KE4 SDNESDEEVAGKKSFSAQEREYIRQGKEATAVVDQILAQEEN---WKFEKNNEYGDTVYT
::....: ... ::. .... .. .
CCDS10 MDPALAAQMSEAVAEKMLQYRRDTAGWKICREGNGVSVSWR
10 20 30 40
280 290 300 310 320 330
pF1KE4 IEVPFHGKTFILKTFLPCPAELVYQEVILQPER---MVLWNKTVTACQILQRVEDNTLIS
: : :. . . .. : :.. : .: : :...::. .:.: . :. .:
CCDS10 PSVEFPGNLYRGEGIVYGTLEEVWDCV--KPAVGGLRVKWDENVTGFEIIQSITDTLCVS
50 60 70 80 90
340 350 360 370 380
pF1KE4 YDVSAGAAGGVVSPRDFVNVRRIERRRDRYLSSGIA-TSHSAKPPTHKYVRGENGPGGFI
. .:: ..::::::.. ..: .: .::. . . : :: .::: : : : .
CCDS10 RTSTPSAAMKLISPRDFVDLVLVKRYEDGTISSNATHVEHPLCPPKPGFVRGFNHPCGCF
100 110 120 130 140 150
390 400 410 420 430 440
pF1KE4 VLKSASNPRVCTFVWILNTDLKGRLPRYLIHQSLAATMFEFAFHLRQRISELGARA
..: ..: ...:::.: ::. .. . . .: .: .:.. ....
CCDS10 CEPLPGEPTKTNLVTFFHTDLSGYLPQNVVDSFFPRSMTRFYANLQKAVKQFHE
160 170 180 190 200 210
445 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 01:11:08 2016 done: Sun Nov 6 01:11:08 2016
Total Scan time: 3.170 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]