FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4428, 445 aa
  1>>>pF1KE4428 445 - 445 aa - 445 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6118+/-0.000838; mu= 15.9143+/- 0.050
 mean_var=68.4497+/-13.342, 0's: 0 Z-trim(107.4): 14  B-trim: 0 in 0/50
 Lambda= 0.155020
 statistics sampled from 9568 (9574) to 9568 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.294), width:  16
 Scan time:  2.470

The best scores are:                                      opt bits E(32554)
CCDS3000.1 HGD gene_id:3081|Hs108|chr3             ( 445) 3129 708.8 2.8e-204


>>CCDS3000.1 HGD gene_id:3081|Hs108|chr3                  (445 aa)
 initn: 3129 init1: 3129 opt: 3129  Z-score: 3780.9  bits: 708.8 E(32554): 2.8e-204
Smith-Waterman score: 3129; 99.8% identity (100.0% similar) in 445 aa overlap (1-445:1-445)

               10        20        30        40        50        60
pF1KE4 MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 MAELKYISGFGNECSSEDPRCPGSLPEGQNNPQVCPYNLYAEQLSGSAFTCPRSTNKRSW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 LYRILPSVSHKPFESIDEGHVTHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC
       :::::::::::::::::::.::::::::::::::::::::::::::::::::::::::::
CCDS30 LYRILPSVSHKPFESIDEGQVTHNWDEVDPDPNQLRWKPFEIPKASQKKVDFVSGLHTLC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 GAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEIC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GAGDIKSNNGLAIHIFLCNTSMENRCFYNSDGDFLIVPQKGNLLIYTEFGKMLVQPNEIC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 VIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VIQRGMRFSIDVFEETRGYILEVYGVHFELPDLGPIGANGLANPRDFLIPIAWYEDRQVP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 GGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GGYTVINKYQGKLFAAKQDVSPFNVVAWHGNYTPYKYNLKNFMVINSVAFDHADPSIFTV
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 LTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 LTAKSVRPGVAIADFVIFPPRWGVADKTFRPPYYHRNCMSEFMGLIRGHYEAKQGGFLPG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 GGSLHSTMTPHGPDADCFEKASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 GGSLHSTMTPHGPDADCFEKASKVKLAPERIADGTMAFMFESSLSLAVTKWGLKASRCLD
              370       380       390       400       410       420

              430       440     
pF1KE4 ENYHKCWEPLKSHFTPNSRNPAEPN
       :::::::::::::::::::::::::
CCDS30 ENYHKCWEPLKSHFTPNSRNPAEPN
              430       440     




445 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:40:22 2016 done: Sun Nov  6 00:40:22 2016
 Total Scan time:  2.470 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]