FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4409, 423 aa
  1>>>pF1KE4409 423 - 423 aa - 423 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1145+/-0.000725; mu= 18.6957+/- 0.044
 mean_var=64.7083+/-13.070, 0's: 0 Z-trim(108.9): 11  B-trim: 2 in 1/50
 Lambda= 0.159439
 statistics sampled from 10483 (10490) to 10483 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.703), E-opt: 0.2 (0.322), width:  16
 Scan time:  2.290

The best scores are:                                      opt bits E(32554)
CCDS5075.1 SMPD2 gene_id:6610|Hs108|chr6           ( 423) 2917 679.5 1.7e-195


>>CCDS5075.1 SMPD2 gene_id:6610|Hs108|chr6                (423 aa)
 initn: 2917 init1: 2917 opt: 2917  Z-score: 3623.4  bits: 679.5 E(32554): 1.7e-195
Smith-Waterman score: 2917; 99.8% identity (99.8% similar) in 423 aa overlap (1-423:1-423)

               10        20        30        40        50        60
pF1KE4 MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MKPNFSLRLRIFNLNCWGIPYLSKHRADRMRRLGDFLNQESFDLALLEEVWSEQDFQYLR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 QKLSPTYPAAHHFRSGIIGSGLCVFSKHPIQELTQHIYTLNGYPYMIHHGDWFSGKAVGL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 LVLHLSGMVLNAYVTHLHAEYNRQKDIYLAHRVAQAWELAQFIHHTSKKADVVLLCGDLN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MHPEDLGCCLLKEWTGLHDAYLETRDFKGSEEGNTMVPKNCYVSQQELKPFPFGVRIDYV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 LYKAVSGFYISCKSFETTTGFDPHSGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS
       :::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS50 LYKAVSGFYISCKSFETTTGFDPHRGTPLSDHEALMATLFVRHSPPQQNPSSTHGPAERS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 PLMCVLKEAWTELGLGMAQARWWATFASYVIGLGLLLLALLCVLAAGGGAGEAAILLWTP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KE4 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SVGLVLWAGAFYLFHVQEVNGLYRAQAELQHVLGRAREAQDLGPEPQPALLLGQQEGDRT
              370       380       390       400       410       420

          
pF1KE4 KEQ
       :::
CCDS50 KEQ
          




423 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 00:43:56 2016 done: Sun Nov  6 00:43:56 2016
 Total Scan time:  2.290 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]