FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4392, 415 aa
  1>>>pF1KE4392 415 - 415 aa - 415 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3045+/-0.000748; mu= 17.0073+/- 0.045
 mean_var=63.4378+/-12.464, 0's: 0 Z-trim(107.8): 8  B-trim: 7 in 1/51
 Lambda= 0.161028
 statistics sampled from 9800 (9807) to 9800 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.674), E-opt: 0.2 (0.301), width:  16
 Scan time:  2.990

The best scores are:                                      opt bits E(32554)
CCDS4723.1 NEU1 gene_id:4758|Hs108|chr6            ( 415) 2857 672.3 2.3e-193


>>CCDS4723.1 NEU1 gene_id:4758|Hs108|chr6                 (415 aa)
 initn: 2857 init1: 2857 opt: 2857  Z-score: 3584.9  bits: 672.3 E(32554): 2.3e-193
Smith-Waterman score: 2857; 100.0% identity (100.0% similar) in 415 aa overlap (1-415:1-415)

               10        20        30        40        50        60
pF1KE4 MTGERPSTALPDRRWGPRILGFWGGCRVWVFAAIFLLLSLAASWSKAENDFGLVQPLVTM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MTGERPSTALPDRRWGPRILGFWGGCRVWVFAAIFLLLSLAASWSKAENDFGLVQPLVTM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 EQLLWVSGRQIGSVDTFRIPLITATPRGTLLAFAEARKMSSSDEGAKFIALRRSMDQGST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EQLLWVSGRQIGSVDTFRIPLITATPRGTLLAFAEARKMSSSDEGAKFIALRRSMDQGST
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 WSPTAFIVNDGDVPDGLNLGAVVSDVETGVVFLFYSLCAHKAGCQVASTMLVWSKDDGVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WSPTAFIVNDGDVPDGLNLGAVVSDVETGVVFLFYSLCAHKAGCQVASTMLVWSKDDGVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 WSTPRNLSLDIGTEVFAPGPGSGIQKQREPRKGRLIVCGHGTLERDGVFCLLSDDHGASW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WSTPRNLSLDIGTEVFAPGPGSGIQKQREPRKGRLIVCGHGTLERDGVFCLLSDDHGASW
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 RYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRSYDACD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RYGSGVSGIPYGQPKQENDFNPDECQPYELPDGSVVINARNQNNYHCHCRIVLRSYDACD
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 TLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTSWRKET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 TLRPRDVTFDPELVDPVVAAGAVVTSSGIVFFSNPAHPEFRVNLTLRWSFSNGTSWRKET
              310       320       330       340       350       360

              370       380       390       400       410     
pF1KE4 VQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VQLWPGPSGYSSLATLEGSMDGEEQAPQLYVLYEKGRNHYTESISVAKISVYGTL
              370       380       390       400       410     




415 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 01:17:44 2016 done: Tue Nov  8 01:17:44 2016
 Total Scan time:  2.990 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]