FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4385, 406 aa
  1>>>pF1KE4385 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1732+/-0.000779; mu= 18.1981+/- 0.047
 mean_var=71.1687+/-14.045, 0's: 0 Z-trim(108.3): 40  B-trim: 0 in 0/51
 Lambda= 0.152030
 statistics sampled from 10111 (10151) to 10111 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.696), E-opt: 0.2 (0.312), width:  16
 Scan time:  2.610

The best scores are:                                      opt bits E(32554)
CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3         ( 406) 2787 620.3 9.9e-178
CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3        ( 175) 1241 281.0 6.1e-76
CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2        ( 529) 1107 251.9   1e-66
CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2       ( 466)  760 175.8 7.5e-44


>>CCDS3285.1 ST6GAL1 gene_id:6480|Hs108|chr3              (406 aa)
 initn: 2787 init1: 2787 opt: 2787  Z-score: 3304.3  bits: 620.3 E(32554): 9.9e-178
Smith-Waterman score: 2787; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KE4 MIHTNLKKKFSCCVLVFLLFAVICVWKEKKKGSYYDSFKLQTKEFQVLKSLGKLAMGSDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MIHTNLKKKFSCCVLVFLLFAVICVWKEKKKGSYYDSFKLQTKEFQVLKSLGKLAMGSDS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 QSVSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QSVSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 KYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KYKVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 WGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 WGRCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 KRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 KRFLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 PWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFF
              310       320       330       340       350       360

              370       380       390       400      
pF1KE4 DSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 DSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC
              370       380       390       400      

>>CCDS46973.1 ST6GAL1 gene_id:6480|Hs108|chr3             (175 aa)
 initn: 1241 init1: 1241 opt: 1241  Z-score: 1476.9  bits: 281.0 E(32554): 6.1e-76
Smith-Waterman score: 1241; 100.0% identity (100.0% similar) in 175 aa overlap (232-406:1-175)

             210       220       230       240       250       260 
pF1KE4 IDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTEKRFLKDSLYNEGILIVWDPSV
                                     ::::::::::::::::::::::::::::::
CCDS46                               MNSQLVTTEKRFLKDSLYNEGILIVWDPSV
                                             10        20        30

             270       280       290       300       310       320 
pF1KE4 YHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQMPWELWDILQEISPEEIQPNPP
               40        50        60        70        80        90

             330       340       350       360       370       380 
pF1KE4 SSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 SSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKFFDSACTMGAYHPLLYEKNLVKH
              100       110       120       130       140       150

             390       400      
pF1KE4 LNQGTDEDIYLLGKATLPGFRTIHC
       :::::::::::::::::::::::::
CCDS46 LNQGTDEDIYLLGKATLPGFRTIHC
              160       170     

>>CCDS2073.1 ST6GAL2 gene_id:84620|Hs108|chr2             (529 aa)
 initn: 722 init1: 722 opt: 1107  Z-score: 1311.3  bits: 251.9 E(32554): 1e-66
Smith-Waterman score: 1107; 48.9% identity (80.1% similar) in 317 aa overlap (93-406:205-519)

             70        80        90       100       110       120  
pF1KE4 VSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKY
                                     ...:. . ::: : :::::  :.::. ::.
CCDS20 KRHRRQRRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKH
          180       190       200       210       220       230    

            130       140       150       160       170       180  
pF1KE4 KVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGPWG
        : ..:   .  .:   : :.::... :  .. :. ::..  :.  .:   . ..  : :
CCDS20 GVRFRGKREA-GLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPL-SQLHPRG
          240        250       260       270       280        290  

              190       200       210       220       230       240
pF1KE4 --RCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE
          :::: :::.. .:.::.:::.::::::::.::: ....:::.:::::..:::..:. 
CCDS20 LRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNP
            300       310       320       330       340       350  

               250       260       270       280       290         
pF1KE4 KR-FLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQ
       .. :. .:::.. ::..:::. : ...  ::..::::.:. :  .:. .::::::::.:.
CCDS20 SHHFIDSSLYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPK
            360       370       380       390       400       410  

     300       310       320       330       340       350         
pF1KE4 MPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKF
       . :.::::.:: . :.:::::::::..::.:::..: .: .::..:: :.:..:.:.. .
CCDS20 FIWQLWDIIQENTKEKIQPNPPSSGFIGILIMMSMCREVHVYEYIPSVRQTELCHYHELY
            420       430       440       450       460       470  

     360       370       380       390       400                
pF1KE4 FDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC          
       .:.:::.:::::::::: ::..::.::. :..  ::..::::...::          
CCDS20 YDAACTLGAYHPLLYEKLLVQRLNMGTQGDLHRKGKVVLPGFQAVHCPAPSPVIPHS
            480       490       500       510       520         

>>CCDS46380.1 ST6GAL2 gene_id:84620|Hs108|chr2            (466 aa)
 initn: 634 init1: 363 opt: 760  Z-score: 900.7  bits: 175.8 E(32554): 7.5e-44
Smith-Waterman score: 760; 46.5% identity (76.8% similar) in 241 aa overlap (93-330:205-443)

             70        80        90       100       110       120  
pF1KE4 VSSSSTQDPHRGRQTLGSLRGLAKAKPEASFQVWNKDSSSKNLIPRLQKIWKNYLSMNKY
                                     ...:. . ::: : :::::  :.::. ::.
CCDS46 KRHRRQRRSHVLEEGDDGDRLYSSMSRAFLYRLWKGNVSSKMLNPRLQKAMKDYLTANKH
          180       190       200       210       220       230    

            130       140       150       160       170       180  
pF1KE4 KVSYKGPGPGIKFSAEALRCHLRDHVNVSMVEVTDFPFNTSEWEGYLPKESIRTKAGPWG
        : ..:   .  .:   : :.::... :  .. :. ::..  :.  .:   . ..  : :
CCDS46 GVRFRGKREA-GLSRAQLLCQLRSRARVRTLDGTEAPFSALGWRRLVPAVPL-SQLHPRG
          240        250       260       270       280        290  

              190       200       210       220       230       240
pF1KE4 --RCAVVSSAGSLKSSQLGREIDDHDAVLRFNGAPTANFQQDVGTKTTIRLMNSQLVTTE
          :::: :::.. .:.::.:::.::::::::.::: ....:::.:::::..:::..:. 
CCDS46 LRSCAVVMSAGAILNSSLGEEIDSHDAVLRFNSAPTRGYEKDVGNKTTIRIINSQILTNP
            300       310       320       330       340       350  

               250       260       270       280       290         
pF1KE4 KR-FLKDSLYNEGILIVWDPSVYHSDIPKWYQNPDYNFFNNYKTYRKLHPNQPFYILKPQ
       .. :. .:::.. ::..:::. : ...  ::..::::.:. :  .:. .::::::::.:.
CCDS46 SHHFIDSSLYKDVILVAWDPAPYSANLNLWYKKPDYNLFTPYIQHRQRNPNQPFYILHPK
            360       370       380       390       400       410  

     300       310       320       330       340       350         
pF1KE4 MPWELWDILQEISPEEIQPNPPSSGMLGIIIMMTLCDQVDIYEFLPSKRKTDVCYYYQKF
       . :.::::.:: . :.:::::::::..: ..                             
CCDS46 FIWQLWDIIQENTKEKIQPNPPSSGFIGSFVKIGHIRACSEPRSRDCTPAWTTE      
            420       430       440       450       460            

     360       370       380       390       400      
pF1KE4 FDSACTMGAYHPLLYEKNLVKHLNQGTDEDIYLLGKATLPGFRTIHC




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:57:31 2016 done: Sat Nov  5 22:57:32 2016
 Total Scan time:  2.610 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]