FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4383, 404 aa
  1>>>pF1KE4383 404 - 404 aa - 404 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5945+/-0.00105; mu= 14.9209+/- 0.063
 mean_var=59.0168+/-11.624, 0's: 0 Z-trim(102.0): 28  B-trim: 22 in 2/47
 Lambda= 0.166950
 statistics sampled from 6767 (6774) to 6767 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.571), E-opt: 0.2 (0.208), width:  16
 Scan time:  2.770

The best scores are:                                      opt bits E(32554)
CCDS75313.1 ETF1 gene_id:2107|Hs108|chr5           ( 404) 2623 640.5 8.2e-184
CCDS75314.1 ETF1 gene_id:2107|Hs108|chr5           ( 423) 2623 640.5 8.6e-184
CCDS4207.1 ETF1 gene_id:2107|Hs108|chr5            ( 437) 2623 640.5 8.8e-184


>>CCDS75313.1 ETF1 gene_id:2107|Hs108|chr5                (404 aa)
 initn: 2623 init1: 2623 opt: 2623  Z-score: 3413.5  bits: 640.5 E(32554): 8.2e-184
Smith-Waterman score: 2623; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:1-404)

               10        20        30        40        50        60
pF1KE4 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGAITSVQQRLKLYNKVPPNGL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTEALTALLSDDSKFGFIVIDG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 SGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVL
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 HCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPLLEWFANNYKKFGATLEIVT
              310       320       330       340       350       360

              370       380       390       400    
pF1KE4 DKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDLDDY
              370       380       390       400    

>>CCDS75314.1 ETF1 gene_id:2107|Hs108|chr5                (423 aa)
 initn: 2623 init1: 2623 opt: 2623  Z-score: 3413.1  bits: 640.5 E(32554): 8.6e-184
Smith-Waterman score: 2623; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:20-423)

                                  10        20        30        40 
pF1KE4                    MISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGA
                          :::::::::::::::::::::::::::::::::::::::::
CCDS75 MKQDVLNCTEGPIHSNGTSMISLIIPPKDQISRVAKMLADEFGTASNIKSRVNRLSVLGA
               10        20        30        40        50        60

              50        60        70        80        90       100 
pF1KE4 ITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTSLYLCDNKFHTE
               70        80        90       100       110       120

             110       120       130       140       150       160 
pF1KE4 ALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 ALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLR
              130       140       150       160       170       180

             170       180       190       200       210       220 
pF1KE4 MEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLV
              190       200       210       220       230       240

             230       240       250       260       270       280 
pF1KE4 DISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEM
              250       260       270       280       290       300

             290       300       310       320       330       340 
pF1KE4 GAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL
              310       320       330       340       350       360

             350       360       370       380       390       400 
pF1KE4 LEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGMEYQGGDDEFFDL
              370       380       390       400       410       420

          
pF1KE4 DDY
       :::
CCDS75 DDY
          

>>CCDS4207.1 ETF1 gene_id:2107|Hs108|chr5                 (437 aa)
 initn: 2623 init1: 2623 opt: 2623  Z-score: 3412.9  bits: 640.5 E(32554): 8.8e-184
Smith-Waterman score: 2623; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:34-437)

                                             10        20        30
pF1KE4                               MISLIIPPKDQISRVAKMLADEFGTASNIK
                                     ::::::::::::::::::::::::::::::
CCDS42 DPSAADRNVEIWKIKKLIKSLEAARGNGTSMISLIIPPKDQISRVAKMLADEFGTASNIK
            10        20        30        40        50        60   

               40        50        60        70        80        90
pF1KE4 SRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 SRVNRLSVLGAITSVQQRLKLYNKVPPNGLVVYCGTIVTEEGKEKKVNIDFEPFKPINTS
            70        80        90       100       110       120   

              100       110       120       130       140       150
pF1KE4 LYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 LYLCDNKFHTEALTALLSDDSKFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRG
           130       140       150       160       170       180   

              160       170       180       190       200       210
pF1KE4 GQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GQSALRFARLRMEKRHNYVRKVAETAVQLFISGDKVNVAGLVLAGSADFKTELSQSDMFD
           190       200       210       220       230       240   

              220       230       240       250       260       270
pF1KE4 QRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCF
           250       260       270       280       290       300   

              280       290       300       310       320       330
pF1KE4 GVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 GVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETG
           310       320       330       340       350       360   

              340       350       360       370       380       390
pF1KE4 QEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS42 QEHELIESMPLLEWFANNYKKFGATLEIVTDKSQEGSQFVKGFGGIGGILRYRVDFQGME
           370       380       390       400       410       420   

              400    
pF1KE4 YQGGDDEFFDLDDY
       ::::::::::::::
CCDS42 YQGGDDEFFDLDDY
           430       




404 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 06:49:33 2016 done: Thu Nov  3 06:49:34 2016
 Total Scan time:  2.770 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]