Result of FASTA (ccds) for
pFN21AE4381
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KE4381, 401 aa
1>>>pF1KE4381 401 - 401 aa - 401 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2810+/-0.00104; mu= 16.7123+/- 0.062
mean_var=62.5112+/-12.485, 0's: 0 Z-trim(103.2): 36 B-trim: 156 in 1/50
Lambda= 0.162217
statistics sampled from 7260 (7290) to 7260 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.596), E-opt: 0.2 (0.224), width: 16
Scan time: 2.620
The best scores are: opt bits E(32554)
CCDS33882.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 401) 2629 624.2 6.4e-179
CCDS3175.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 408) 2236 532.3 3.2e-151
CCDS3174.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 419) 2214 527.1 1.1e-149
CCDS56.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 353) 1946 464.4 7.5e-131
CCDS55.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 367) 1940 463.0 2.1e-130
CCDS11124.1 KCNAB3 gene_id:9196|Hs108|chr17 ( 404) 1817 434.2 1e-121
CCDS55571.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 300) 1734 414.7 5.6e-116
CCDS77845.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 372) 1354 325.8 4e-89
CCDS77844.1 KCNAB1 gene_id:7881|Hs108|chr3 ( 390) 1354 325.8 4.2e-89
CCDS55570.1 KCNAB2 gene_id:8514|Hs108|chr1 ( 415) 1163 281.2 1.3e-75
CCDS194.1 AKR7A2 gene_id:8574|Hs108|chr1 ( 359) 264 70.7 2.4e-12
CCDS193.1 AKR7A3 gene_id:22977|Hs108|chr1 ( 331) 261 70.0 3.6e-12
>>CCDS33882.1 KCNAB1 gene_id:7881|Hs108|chr3 (401 aa)
initn: 2629 init1: 2629 opt: 2629 Z-score: 3325.6 bits: 624.2 E(32554): 6.4e-179
Smith-Waterman score: 2629; 100.0% identity (100.0% similar) in 401 aa overlap (1-401:1-401)
10 20 30 40 50 60
pF1KE4 MQVSIACTEHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MQVSIACTEHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 LKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 AEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 AEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQR
130 140 150 160 170 180
190 200 210 220 230 240
pF1KE4 LQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KE4 MIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 MIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRAS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KE4 LKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS33 LKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSST
310 320 330 340 350 360
370 380 390 400
pF1KE4 PEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
:::::::::::::::::::::::::::::::::::::::::
CCDS33 PEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
370 380 390 400
>>CCDS3175.1 KCNAB1 gene_id:7881|Hs108|chr3 (408 aa)
initn: 2235 init1: 2235 opt: 2236 Z-score: 2828.5 bits: 532.3 E(32554): 3.2e-151
Smith-Waterman score: 2236; 97.1% identity (98.0% similar) in 349 aa overlap (53-401:60-408)
30 40 50 60 70 80
pF1KE4 SKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLR
: : :::.:.: .::: ::::::::::
CCDS31 WHLAVTKTQPQAACKPVRPSGAAEQKYVEKFLRVHGISLQETTRAETGMAYRNLGKSGLR
30 40 50 60 70 80
90 100 110 120 130 140
pF1KE4 VSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGW
90 100 110 120 130 140
150 160 170 180 190 200
pF1KE4 RRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 RRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE
150 160 170 180 190 200
210 220 230 240 250 260
pF1KE4 IVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 IVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQ
210 220 230 240 250 260
270 280 290 300 310 320
pF1KE4 LPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNK
270 280 290 300 310 320
330 340 350 360 370 380
pF1KE4 LKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVV
330 340 350 360 370 380
390 400
pF1KE4 NEIDNILRNKPYSKKDYRS
:::::::::::::::::::
CCDS31 NEIDNILRNKPYSKKDYRS
390 400
>>CCDS3174.1 KCNAB1 gene_id:7881|Hs108|chr3 (419 aa)
initn: 2200 init1: 2200 opt: 2214 Z-score: 2800.5 bits: 527.1 E(32554): 1.1e-149
Smith-Waterman score: 2214; 89.7% identity (94.5% similar) in 380 aa overlap (23-401:42-419)
10 20 30 40 50
pF1KE4 MQVSIACTEHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTVAIIAR-SLG
.:.:: .:. . :: : .:.. . ..
CCDS31 QISEENTKLRRQSGFSVAGKDKSPKKASENAKDSSLSPSGESQLRA--RQLALLREVEMN
20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAY
. .: ...:. ::: .::::::::::::::::::::::::::::::::::::::
CCDS31 WYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHII
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 EGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIME
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIME
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 AYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGN
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE4 GVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGV
310 320 330 340 350 360
360 370 380 390 400
pF1KE4 SSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
370 380 390 400 410
>>CCDS56.1 KCNAB2 gene_id:8514|Hs108|chr1 (353 aa)
initn: 1943 init1: 1943 opt: 1946 Z-score: 2462.6 bits: 464.4 E(32554): 7.5e-131
Smith-Waterman score: 1946; 82.2% identity (95.0% similar) in 343 aa overlap (59-401:13-353)
30 40 50 60 70 80
pF1KE4 APNVVNAARAKFRTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGL
.::... . :: ::::::::::::::::
CCDS56 MYPESTTGSPARLSLRQTGS--PGMIYRNLGKSGLRVSCLGL
10 20 30 40
90 100 110 120 130 140
pF1KE4 GTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLV
::::::::::.::.::.:::.::..:.::::::::::::::::.::.:::::::::::::
CCDS56 GTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLV
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE4 ITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMT
::::..:::::::::::::::::::::.::.:::::::::::::::: :::::: :::::
CCDS56 ITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEETVRAMT
110 120 130 140 150 160
210 220 230 240 250 260
pF1KE4 HVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYH
:::::::::::::::::.::::::::::::::. ::.:::::::.:::::::::::::.:
CCDS56 HVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFH
170 180 190 200 210 220
270 280 290 300 310 320
pF1KE4 KIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSP
::::::::::::::::.:::: .:.: :::::: :::::..:.:::::.:: :::.:.
CCDS56 KIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQA
230 240 250 260 270 280
330 340 350 360 370 380
pF1KE4 IAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNI
:::::::::::::.:::::::::::::::.:. .::.::.::::::::..: ...:::.:
CCDS56 IAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSI
290 300 310 320 330 340
390 400
pF1KE4 LRNKPYSKKDYRS
: :::::::::::
CCDS56 LGNKPYSKKDYRS
350
>>CCDS55.1 KCNAB2 gene_id:8514|Hs108|chr1 (367 aa)
initn: 1931 init1: 1931 opt: 1940 Z-score: 2454.8 bits: 463.0 E(32554): 2.1e-130
Smith-Waterman score: 1940; 80.6% identity (93.4% similar) in 350 aa overlap (52-401:18-367)
30 40 50 60 70 80
pF1KE4 LSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGL
: .: : . .. :. . :::::::::
CCDS55 MYPESTTGSPARLSLRQTGSPGMIYSTRYGSPKRQLQFYRNLGKSGL
10 20 30 40
90 100 110 120 130 140
pF1KE4 RVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKG
:::::::::::::::::.::.::.:::.::..:.::::::::::::::::.::.::::::
CCDS55 RVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKG
50 60 70 80 90 100
150 160 170 180 190 200
pF1KE4 WRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPME
:::::::::::..:::::::::::::::::::::.::.:::::::::::::::: :::::
CCDS55 WRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPME
110 120 130 140 150 160
210 220 230 240 250 260
pF1KE4 EIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEV
: ::::::::::::::::::::::.::::::::::::::. ::.:::::::.::::::::
CCDS55 ETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEYHMFQREKVEV
170 180 190 200 210 220
270 280 290 300 310 320
pF1KE4 QLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERIVSEEGRKQQN
:::::.:::::::::::::::::.:::: .:.: :::::: :::::..:.:::::.::
CCDS55 QLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKILSEEGRRQQA
230 240 250 260 270 280
330 340 350 360 370 380
pF1KE4 KLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHV
:::.:. :::::::::::::.:::::::::::::::.:. .::.::.::::::::..: .
CCDS55 KLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAIQVLPKLSSSI
290 300 310 320 330 340
390 400
pF1KE4 VNEIDNILRNKPYSKKDYRS
..:::.:: :::::::::::
CCDS55 IHEIDSILGNKPYSKKDYRS
350 360
>>CCDS11124.1 KCNAB3 gene_id:9196|Hs108|chr17 (404 aa)
initn: 1851 init1: 1752 opt: 1817 Z-score: 2298.6 bits: 434.2 E(32554): 1e-121
Smith-Waterman score: 1817; 67.6% identity (84.9% similar) in 410 aa overlap (1-397:1-404)
10 20 30 40
pF1KE4 MQVSIACTEHNLKSRNGEDRLLSKQSSTA-------------PNVVNAARAKFRTVAIIA
:::::::::.::.::..:::: . . . . : ... : :. :..
CCDS11 MQVSIACTEQNLRSRSSEDRLCGPRPGPGGGNGGPAGGGHGNPPGGGGSGPKARA-ALVP
10 20 30 40 50
50 60 70 80 90 100
pF1KE4 RSLGTFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLM
: : .:.:::.. :::::::::::::::::::::::::::.:::::.:: ..
CCDS11 RP-----PAPAGALRESTGRGTGMKYRNLGKSGLRVSCLGLGTWVTFGSQISDETAEDVL
60 70 80 90 100 110
110 120 130 140 150 160
pF1KE4 TIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSR
:.::: ::::::::::::::::: ::.:.:.::::::: :::::..:::.:::::::::
CCDS11 TVAYEHGVNLFDTAEVYAAGKAERTLGNILKSKGWRRSSYVITTKIFWGGQAETERGLSR
120 130 140 150 160 170
170 180 190 200 210 220
pF1KE4 KHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAM
:::::::.:::.:::: :::.::::: : : ::::::::::.:::::.:.:::::::.:
CCDS11 KHIIEGLRGSLERLQLGYVDIVFANRSDPNCPMEEIVRAMTYVINQGLALYWGTSRWGAA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KE4 EIMEAYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISG
:::::::.:::::.:::::::::.:::::::::.::::::::::::..:: :::::.:..
CCDS11 EIMEAYSMARQFNLIPPVCEQAEHHLFQREKVEMQLPELYHKIGVGSVTWYPLACGLITS
240 250 260 270 280 290
290 300 310 320 330 340
pF1KE4 KYGNGVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLR
:: . ::.. :::.: :::::... ::.:.::: :. :: :.:..::::. :::.:::::
CCDS11 KYDGRVPDTCRASIKGYQWLKDKVQSEDGKKQQAKVMDLLPVAHQLGCTVAQLAIAWCLR
300 310 320 330 340 350
350 360 370 380 390 400
pF1KE4 NEGVSSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
.::::::::: :. :::::.:::.::: ..: ..: :::..: :::.:::
CCDS11 SEGVSSVLLGVSSAEQLIEHLGALQVLSQLTPQTVMEIDGLLGNKPHSKK
360 370 380 390 400
>>CCDS55571.1 KCNAB2 gene_id:8514|Hs108|chr1 (300 aa)
initn: 1734 init1: 1734 opt: 1734 Z-score: 2195.6 bits: 414.7 E(32554): 5.6e-116
Smith-Waterman score: 1734; 83.3% identity (96.0% similar) in 300 aa overlap (102-401:1-300)
80 90 100 110 120 130
pF1KE4 KYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEV
.::.:::.::..:.::::::::::::::::
CCDS55 MAEQLMTLAYDNGINLFDTAEVYAAGKAEV
10 20 30
140 150 160 170 180 190
pF1KE4 ILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFA
.::.:::::::::::::::::..:::::::::::::::::::::.::.::::::::::::
CCDS55 VLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFA
40 50 60 70 80 90
200 210 220 230 240 250
pF1KE4 NRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFNMIPPVCEQAEY
:::: :::::: ::::::::::::::::::::::.::::::::::::::. ::.::::::
CCDS55 NRPDPNTPMEETVRAMTHVINQGMAMYWGTSRWSSMEIMEAYSVARQFNLTPPICEQAEY
100 110 120 130 140 150
260 270 280 290 300 310
pF1KE4 HLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRASLKCYQWLKERI
:.:::::::::::::.:::::::::::::::::.:::: .:.: :::::: :::::..:
CCDS55 HMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDSGIPPYSRASLKGYQWLKDKI
160 170 180 190 200 210
320 330 340 350 360 370
pF1KE4 VSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSSTPEQLIENLGAI
.:::::.:: :::.:. :::::::::::::.:::::::::::::::.:. .::.::.:::
CCDS55 LSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGVSSVLLGASNADQLMENIGAI
220 230 240 250 260 270
380 390 400
pF1KE4 QVLPKMTSHVVNEIDNILRNKPYSKKDYRS
:::::..: ...:::.:: :::::::::::
CCDS55 QVLPKLSSSIIHEIDSILGNKPYSKKDYRS
280 290 300
>>CCDS77845.1 KCNAB1 gene_id:7881|Hs108|chr3 (372 aa)
initn: 1353 init1: 1353 opt: 1354 Z-score: 1713.5 bits: 325.8 E(32554): 4e-89
Smith-Waterman score: 2371; 92.8% identity (92.8% similar) in 401 aa overlap (1-401:1-372)
10 20 30 40 50 60
pF1KE4 MQVSIACTEHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MQVSIACTEHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTVAIIARSLGTFTPQHHIS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 LKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 AEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQR
:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHII---------
130 140 150 160 170
190 200 210 220 230 240
pF1KE4 LQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFN
::::::::::::::::::::::::::::::::::::::::
CCDS77 --------------------EEIVRAMTHVINQGMAMYWGTSRWSAMEIMEAYSVARQFN
180 190 200 210
250 260 270 280 290 300
pF1KE4 MIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGNGVPESSRAS
220 230 240 250 260 270
310 320 330 340 350 360
pF1KE4 LKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGVSSVLLGSST
280 290 300 310 320 330
370 380 390 400
pF1KE4 PEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
:::::::::::::::::::::::::::::::::::::::::
CCDS77 PEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
340 350 360 370
>>CCDS77844.1 KCNAB1 gene_id:7881|Hs108|chr3 (390 aa)
initn: 1353 init1: 1353 opt: 1354 Z-score: 1713.2 bits: 325.8 E(32554): 4.2e-89
Smith-Waterman score: 1956; 82.1% identity (86.8% similar) in 380 aa overlap (23-401:42-390)
10 20 30 40 50
pF1KE4 MQVSIACTEHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTVAIIAR-SLG
.:.:: .:. . :: : .:.. . ..
CCDS77 QISEENTKLRRQSGFSVAGKDKSPKKASENAKDSSLSPSGESQLRA--RQLALLREVEMN
20 30 40 50 60
60 70 80 90 100 110
pF1KE4 TFTPQHHISLKESTAKQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAY
. .: ...:. ::: .::::::::::::::::::::::::::::::::::::::
CCDS77 WYLKLCDLSSEHTTVCTTGMPHRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAY
70 80 90 100 110 120
120 130 140 150 160 170
pF1KE4 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHII
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHII
130 140 150 160 170 180
180 190 200 210 220 230
pF1KE4 EGLKGSLQRLQLEYVDVVFANRPDSNTPMEEIVRAMTHVINQGMAMYWGTSRWSAMEIME
: ::::::::::::::::::::::::::::::
CCDS77 E-----------------------------EIVRAMTHVINQGMAMYWGTSRWSAMEIME
190 200 210 220
240 250 260 270 280 290
pF1KE4 AYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGN
230 240 250 260 270 280
300 310 320 330 340 350
pF1KE4 GVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGV
290 300 310 320 330 340
360 370 380 390 400
pF1KE4 SSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 SSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
350 360 370 380 390
>>CCDS55570.1 KCNAB2 gene_id:8514|Hs108|chr1 (415 aa)
initn: 1161 init1: 1161 opt: 1163 Z-score: 1471.2 bits: 281.2 E(32554): 1.3e-75
Smith-Waterman score: 1966; 77.1% identity (89.7% similar) in 380 aa overlap (39-401:36-415)
10 20 30 40 50 60
pF1KE4 EHNLKSRNGEDRLLSKQSSTAPNVVNAARAKFRTV--AIIARSLGTFTPQHHISLKESTA
..: : : ::.. .: .: .:: ::
CCDS55 YSESLRSVSSRCHSEWALHPVRQTDTLELQRLREVRAAAQARNMESFLRMHGLSLDGCTA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KE4 KQTGMKYRNLGKSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAA
..::::::::::::::::::::::::::::::.::.::.:::.::..:.:::::::::::
CCDS55 QRTGMKYRNLGKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KE4 GKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYV
:::::.::.:::::::::::::::::..:::::::::::::::::::::.::.:::::::
CCDS55 GKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYV
130 140 150 160 170 180
190 200 210 220 230
pF1KE4 DVVFANRPDSNTPME---------------EIVRAMTHVINQGMAMYWGTSRWSAMEIME
::::::::: ::::: : ::::::::::::::::::::::.:::::
CCDS55 DVVFANRPDPNTPMEGDPFSSSKSRTFIIEETVRAMTHVINQGMAMYWGTSRWSSMEIME
190 200 210 220 230 240
240 250 260 270 280 290
pF1KE4 AYSVARQFNMIPPVCEQAEYHLFQREKVEVQLPELYHKIGVGAMTWSPLACGIISGKYGN
:::::::::. ::.:::::::.:::::::::::::.:::::::::::::::::.:::: .
CCDS55 AYSVARQFNLTPPICEQAEYHMFQREKVEVQLPELFHKIGVGAMTWSPLACGIVSGKYDS
250 260 270 280 290 300
300 310 320 330 340 350
pF1KE4 GVPESSRASLKCYQWLKERIVSEEGRKQQNKLKDLSPIAERLGCTLPQLAVAWCLRNEGV
:.: :::::: :::::..:.:::::.:: :::.:. :::::::::::::.:::::::::
CCDS55 GIPPYSRASLKGYQWLKDKILSEEGRRQQAKLKELQAIAERLGCTLPQLAIAWCLRNEGV
310 320 330 340 350 360
360 370 380 390 400
pF1KE4 SSVLLGSSTPEQLIENLGAIQVLPKMTSHVVNEIDNILRNKPYSKKDYRS
::::::.:. .::.::.::::::::..: ...:::.:: :::::::::::
CCDS55 SSVLLGASNADQLMENIGAIQVLPKLSSSIIHEIDSILGNKPYSKKDYRS
370 380 390 400 410
401 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:59:14 2016 done: Sat Nov 5 22:59:15 2016
Total Scan time: 2.620 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]