FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4380, 400 aa
  1>>>pF1KE4380 400 - 400 aa - 400 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9540+/-0.00102; mu= 1.8485+/- 0.061
 mean_var=214.8927+/-42.826, 0's: 0 Z-trim(111.3): 17  B-trim: 12 in 1/50
 Lambda= 0.087491
 statistics sampled from 12248 (12257) to 12248 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.724), E-opt: 0.2 (0.377), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS35054.1 GOLM1 gene_id:51280|Hs108|chr9         ( 401) 2600 340.7 1.4e-93


>>CCDS35054.1 GOLM1 gene_id:51280|Hs108|chr9              (401 aa)
 initn: 2600 init1: 2600 opt: 2600  Z-score: 1793.4  bits: 340.7 E(32554): 1.4e-93
Smith-Waterman score: 2600; 100.0% identity (100.0% similar) in 400 aa overlap (1-400:2-401)

                10        20        30        40        50         
pF1KE4  MGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 MMGLGNGRRSMKSPPLVLAALVACIIVLGFNYWIASSRSVDLQTRIMELEGRVRRAAAER
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KE4 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKAVLVNNITTGERLIRVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GAVELKKNEFQGELEKQREQLDKIQSSHNFQLESVNKLYQDEKAVLVNNITTGERLIRVL
               70        80        90       100       110       120

     120       130       140       150       160       170         
pF1KE4 QDQLKTLQRNYGRLQQDVLQFQKNQTNLERKFSYDLSQCINQMKEVKEQCEERIEEVTKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QDQLKTLQRNYGRLQQDVLQFQKNQTNLERKFSYDLSQCINQMKEVKEQCEERIEEVTKK
              130       140       150       160       170       180

     180       190       200       210       220       230         
pF1KE4 GNEAVASRDLSENNDQRQQLQALSEPQPRLQAAGLPHTEVPQGKGNVLGNSKSQTPAPSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 GNEAVASRDLSENNDQRQQLQALSEPQPRLQAAGLPHTEVPQGKGNVLGNSKSQTPAPSS
              190       200       210       220       230       240

     240       250       260       270       280       290         
pF1KE4 EVVLDSKRQVEKEETNEIQVVNEEPQRDRLPQEPGREQVVEDRPVGGRGFGGAGELGQTP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EVVLDSKRQVEKEETNEIQVVNEEPQRDRLPQEPGREQVVEDRPVGGRGFGGAGELGQTP
              250       260       270       280       290       300

     300       310       320       330       340       350         
pF1KE4 QVQAALSVSQENPEMEGPERDQLVIPDGQEEEQEAAGEGRNQQKLRGEDDYNMDENEAES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QVQAALSVSQENPEMEGPERDQLVIPDGQEEEQEAAGEGRNQQKLRGEDDYNMDENEAES
              310       320       330       340       350       360

     360       370       380       390       400
pF1KE4 ETDKQAALAGNDRNIDVFNVEDQKRDTINLLDQREKRNHTL
       :::::::::::::::::::::::::::::::::::::::::
CCDS35 ETDKQAALAGNDRNIDVFNVEDQKRDTINLLDQREKRNHTL
              370       380       390       400 




400 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:59:54 2016 done: Sat Nov  5 22:59:55 2016
 Total Scan time:  3.120 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]