FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE4375, 395 aa
  1>>>pF1KE4375 395 - 395 aa - 395 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7536+/-0.000965; mu= 14.3992+/- 0.058
 mean_var=68.0716+/-13.829, 0's: 0 Z-trim(104.9): 11  B-trim: 41 in 1/49
 Lambda= 0.155450
 statistics sampled from 8129 (8131) to 8129 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.622), E-opt: 0.2 (0.25), width:  16
 Scan time:  2.390

The best scores are:                                      opt bits E(32554)
CCDS7365.1 MAT1A gene_id:4143|Hs108|chr10          ( 395) 2662 606.1 1.7e-173
CCDS1977.1 MAT2A gene_id:4144|Hs108|chr2           ( 395) 2311 527.4 8.6e-150


>>CCDS7365.1 MAT1A gene_id:4143|Hs108|chr10               (395 aa)
 initn: 2662 init1: 2662 opt: 2662  Z-score: 3228.1  bits: 606.1 E(32554): 1.7e-173
Smith-Waterman score: 2662; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KE4 MNGPVDGLCDHSLSEGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MNGPVDGLCDHSLSEGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 KTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 KTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 VAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 VAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVI
              310       320       330       340       350       360

              370       380       390     
pF1KE4 VRDLDLKKPIYQKTACYGHFGRSEFPWEVPRKLVF
       :::::::::::::::::::::::::::::::::::
CCDS73 VRDLDLKKPIYQKTACYGHFGRSEFPWEVPRKLVF
              370       380       390     

>>CCDS1977.1 MAT2A gene_id:4144|Hs108|chr2                (395 aa)
 initn: 2339 init1: 2311 opt: 2311  Z-score: 2802.7  bits: 527.4 E(32554): 8.6e-150
Smith-Waterman score: 2311; 84.3% identity (95.4% similar) in 395 aa overlap (1-395:1-395)

               10        20        30        40        50        60
pF1KE4 MNGPVDGLCDHSLSEGVFMFTSESVGEGHPDKICDQISDAVLDAHLKQDPNAKVACETVC
       ::: ..:. .  . ::.:.:::::::::::::::::::::::::::.:::.:::::::: 
CCDS19 MNGQLNGFHEAFIEEGTFLFTSESVGEGHPDKICDQISDAVLDAHLQQDPDAKVACETVA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE4 KTGMVLLCGEITSMAMVDYQRVVRDTIKHIGYDDSAKGFDFKTCNVLVALEQQSPDIAQC
       ::::.:: ::::: : ::::.:::...::::::::.::::.:::::::::::::::::: 
CCDS19 KTGMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKGFDYKTCNVLVALEQQSPDIAQG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KE4 VHLDRNEEDVGAGDQGLMFGYATDETEECMPLTIILAHKLNARMADLRRSGLLPWLRPDS
       :::::::::.::::::::::::::::::::::::.:::::::..:.:::.: ::::::::
CCDS19 VHLDRNEEDIGAGDQGLMFGYATDETEECMPLTIVLAHKLNAKLAELRRNGTLPWLRPDS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KE4 KTQVTVQYMQDNGAVIPVRIHTIVISVQHNEDITLEEMRRALKEQVIRAVVPAKYLDEDT
       ::::::::::: :::.:.:.:::::::::.:.. :.::: ::::.::.::::::::::::
CCDS19 KTQVTVQYMQDRGAVLPIRVHTIVISVQHDEEVCLDEMRDALKEKVIKAVVPAKYLDEDT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KE4 VYHLQPSGRFVIGGPQGDAGVTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
       .:::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS19 IYHLQPSGRFVIGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KE4 VAKSLVKAGLCRRVLVQVSYAIGVAEPLSISIFTYGTSQKTERELLDVVHKNFDLRPGVI
       :::::::.::::::::::::::::..::::::: ::::::.:::::..:.::::::::::
CCDS19 VAKSLVKGGLCRRVLVQVSYAIGVSHPLSISIFHYGTSQKSERELLEIVKKNFDLRPGVI
              310       320       330       340       350       360

              370       380       390     
pF1KE4 VRDLDLKKPIYQKTACYGHFGRSEFPWEVPRKLVF
       ::::::::::::.:: ::::::. ::::::.:: .
CCDS19 VRDLDLKKPIYQRTAAYGHFGRDSFPWEVPKKLKY
              370       380       390     




395 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:39:18 2016 done: Mon Nov  7 17:39:19 2016
 Total Scan time:  2.390 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]